Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00080 ATGGCGAATAATTGGTGGACTGGGAATGTAGCTATGAGTCAAAGAGAAAGTATGCCATCATCTCCATCATCACTTCATCTCAAAAGagaacaagaacaagcggaagaaaacagcaataatagcagcaacaacaacacaaacgaagatgaagaaaacaacaacaacaacaacaacaacGTTGATGAACAAAACCCTTCTGAACCAGGTAGCAGTAGCCGCCGTCCACGTGGCAGACCACCAGGTTCCAAAAACAAACCAAAACCACCCATCGTTATAACCAAAGAATCCCCCAACGCTCTCAGAAGCCACGTCTTAGAAATCATCAGCGGTAGTGACGTGGCGGAGAGCATAGCCGCCTTCGCTAACCGCCGACACCGCGGTGTGTCCGTCTTAAGCGGGAGCGGCATTGTTGCTAATGTAACGCTTCGACAACCGGCTGCTCCCGGTGGTGTTATTACTCTTCATGGAAGATTCGAGATACTCTCGCTTTCCGGCGCTTTTTTGCCGTCTCCTTCGCCGCCTGGAGCCACCGGACTTACTGTTTATTTAGCCGGTGGTCAGGGACAGGTTGTCGGCGGTTCTGTGGCGGGTTCTTTGATTGCCTCTGGACCTGTTATGGTTATTGCAGCTACTTTTGCTAATGCTACTTATGAAAGGTTACCATTGGAAGATGAACAAGGTGATGAACAAGAAATGGAAGTgcagcagcagcaacaacaatctggtgtgaattcagcaactattgcagcagcagcagcagTTACTTCTTCATCTCAAGTTTTGAATGAACAACAGCAACATTTACAACATCAGGTTTCAATGCCTATGTATAACTTGCCACCCAATTTGATACATAATAGTCATCCAATGTCTCATGATGTGTTTTGGGGTGCAccgcctcctcgacctcctcctcctcctTTCTGA 927 0.3819 MANNWWTGNVAMSQRESMPSSPSSLHLKREQEQAEENSNNSSNNNTNEDEENNNNNNNNVDEQNPSEPGSSSRRPRGRPPGSKNKPKPPIVITKESPNALRSHVLEIISGSDVAESIAAFANRRHRGVSVLSGSGIVANVTLRQPAAPGGVITLHGRFEILSLSGAFLPSPSPPGATGLTVYLAGGQGQVVGGSVAGSLIASGPVMVIAATFANATYERLPLEDEQGDEQEMEVQQQQQQSGVNSATIAAAAAVTSSSQVLNEQQQHLQHQVSMPMYNLPPNLIHNSHPMSHDVFWGAPPPRPPPPPF 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00080 308 SUPERFAMILY AF0104/ALDC/Ptd012-like 97 226 - -
Car06g00080 308 ProSiteProfiles PPC domain profile profile. 97 235 IPR005175 -
Car06g00080 308 PIRSF ESCAROLA 11 308 IPR014476 GO:0003680
Car06g00080 308 Pfam Plants and Prokaryotes Conserved (PCC) domain 101 213 IPR005175 -
Car06g00080 308 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 24 305 IPR014476 GO:0003680
Car06g00080 308 Gene3D - 100 258 - -
Car06g00080 308 MobiDBLite consensus disorder prediction 1 27 - -
Car06g00080 308 CDD DUF296 101 212 IPR005175 -
Car06g00080 308 MobiDBLite consensus disorder prediction 1 97 - -
Car06g00080 308 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 24 305 - -
Car06g00080 308 MobiDBLite consensus disorder prediction 36 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00080 Car-Chr6 1015965 1018000 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00080 1 305 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 55.352 1.14e-79 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00080 - - gmx:102667174 315.849