Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00074 ATGTCTTCAGGGACATCCTCGTATTGGTGTTACAGATGCAGTCGATTTGTTAGGGTAGGGAGACAAGAAACGGTTACTTGTCCCGATTGTGACGGCGGATTTGTCGAGGAAATCGAACATCCATCCCATTCTGTCCACGTGGACTCTCGCCGCCGACGTTTTCCTGCTGCTGCTATGTACATGATCGGTCAACATCCCGGTTCCGATGACAATTCTCGTCCACCTTTTCTCCGTCGAACCCGCCGCAACGGAGGTGACCGGTCACCTTTCAATCCGGTGATCGTCCTACGCGGAAGTGGATCAACGGAGGTAACAGAAGGTGGTAGCACAGGAGAGAGTCGTGGGTTTGAGCTTTTCTATGATGATGGTGCTGGTTCTGGTCTTAGACCTTTACCACCAAGTATGTCAGAGTTTCTTTTGGGATCTGGATTTGATAGACTGTTAGAACAACTTTCTCAGATTGAAATCAACGGTATTGGAAGATATGAACATCCACCAGCTTCAAAAACAGCCGTTGATTCATTACCAACTATTGAAATCAATGGGTGTCATTTGGATATGGAATCACACTGTGCAGTTTGCAAAGAGGCTTTTCAGTTAGGTACTGTTGTTAGAGAAATGCCTTGTAAACATATTTATCATCCTGATTGTATTTTACCTTGGCTTGCACTTCACAATTCTTGTCCTGTTTGTCGTCATGAGTTACCTTCTGATAATGAATTGCAATCGCAAACGCAGTCGCAATCAGTTGGTTTGAATGAGGAAGATAATAATGTTGGTTTAACTATTTGGAGATTACCTGGTGGTGGTTTTGCTGTTGGGAGATTTGCTGGTGGGAGAAGAGGTGCTGAGAGGGAACTACCTGTTGTTTATACTGAAATGGATGGTGCATTTAATAACGGTGGCGAACCCAGGAGGATTTCTTGGTCTTCTGGAGGGAGTAGAGAAAGGGAGAGAGGTGGTTTCAGAAGCTTGTTTGGACATTTCTTTGGTTGTTTTAGAGGTGGAGTTCGGAATCAGCCTTCTATTTCTAGTACACATTCCAGATCTTTGAGGACTAATTCTTCCAATATGGATCCTTCTCAGCGGTCACGAAGGACTTGGTCTATGGATGTAAACAGTGGAATGAGATCGTG 1136 0.4463 MSSGTSSYWCYRCSRFVRVGRQETVTCPDCDGGFVEEIEHPSHSVHVDSRRRRFPAAAMYMIGQHPGSDDNSRPPFLRRTRRNGGDRSPFNPVIVLRGSGSTEVTEGGSTGESRGFELFYDDGAGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGIGRYEHPPASKTAVDSLPTIEINGCHLDMESHCAVCKEAFQLGTVVREMPCKHIYHPDCILPWLALHNSCPVCRHELPSDNELQSQTQSQSVGLNEEDNNVGLTIWRLPGGGFAVGRFAGGRRGAERELPVVYTEMDGAFNNGGEPRRISWSSGGSRERERGGFRSLFGHFFGCFRGGVRNQPSISSTHSRSLRTNSSNMDPSQRSRRTWSMDVNSGMRS 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00074 378 Pfam zinc-ribbon 7 38 IPR039525 GO:0061630
Car06g00074 378 SMART ring_2 191 231 IPR001841 -
Car06g00074 378 Pfam Protein of unknown function (DUF1117) 259 358 IPR010543 -
Car06g00074 378 CDD RING-H2_RNF126_like 191 232 - -
Car06g00074 378 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 2 330 - -
Car06g00074 378 MobiDBLite consensus disorder prediction 341 378 - -
Car06g00074 378 MobiDBLite consensus disorder prediction 63 93 - -
Car06g00074 378 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 2 330 - -
Car06g00074 378 ProSiteProfiles Zinc finger RING-type profile. 191 232 IPR001841 -
Car06g00074 378 Pfam Ring finger domain 190 232 IPR001841 -
Car06g00074 378 SUPERFAMILY RING/U-box 171 239 - -
Car06g00074 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 157 238 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00074 Car-Chr6 976360 977495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00074 130 240 C3H Transcription Factor Family AT5G01980 42.342 1.45e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00074 - K11982 gmx:100807324 546.584