Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00047 ATGGCTTCTTCCTTGGATATGTCACTTGATGACAGAATTAAGAACAGGAGTAACAGAGGCAGAGGACGTGGCAGAGCCCGTTCAGGCCGTGGAAGTGGGACTCTTGGTGGTGGAAGAATAACTGGTGCTGTTAATGGTAGAAGACTGACTGGTCCTGGTAACGGTGGAAGAACAACTGGTGCTGTTCGCAGGGGTCCACTTATGGTCAACACTCGCCCATCATCTTTTGCTATTGCCAAGTCTATTCGCAGAACCAAGCCTTTCCCGATGCAGAATGATTTGTTTGAGGATAGCCTTAGAGCTGCAGGAATTCAAGGAGTAGAAGCCGACACAAAGTTGTATGTTTCCAACTTGGACCGTGGAGTAACCAATGAAGATATACGGGAACTTTTCTCTGAGCTTGGAGACTTGAAGCGCTATGCTGTTCATTATGACAAAAATGGACACCCAACTGGTTCAGCTGAAGTAGTCTATAATAGGAGAAGTGATGCATTTGCTGCTCTCAAACGATATAACAATGTACTTTTGGATGGAAAGCCGATGAAGATTGAGATTGTTGGAACAAATTCAGAATTACCCATAACCGCACGGGTCAATGTCACTGGGATAAATGGACAGAGGAAGAGGACAGTTGTGATGACGCCTAGAGGTGGTCAAGCTGGAGGTCCTGCCATGCTAAATCGCGGTTCTGGTTGGGGACGCCATGCTGGCTCAAGGATTggtagtggacgcggccgaggccgtggtcgtgttgccaggggtggaggtcgaggtcttggcagaggtggaggtcgtggtcgtggAAGAAAGGATGCAGTTGAAAAGTCAGCTGAGGAACTTGACAAAGAGCTGGAGACCTATCATGCTGAGGCTATGAATATCTCATAA 888 0.4189 MASSLDMSLDDRIKNRSNRGRGRGRARSGRGSGTLGGGRITGAVNGRRLTGPGNGGRTTGAVRRGPLMVNTRPSSFAIAKSIRRTKPFPMQNDLFEDSLRAAGIQGVEADTKLYVSNLDRGVTNEDIRELFSELGDLKRYAVHYDKNGHPTGSAEVVYNRRSDAFAALKRYNNVLLDGKPMKIEIVGTNSELPITARVNVTGINGQRKRTVVMTPRGGQAGGPAMLNRGSGWGRHAGSRIGSGRGRGRGRVARGGGRGLGRGGGRGRGRKDAVEKSAEELDKELETYHAEAMNIS 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00047 295 SUPERFAMILY RNA-binding domain, RBD 18 185 IPR035979 GO:0003676
Car06g00047 295 Coils Coil 270 295 - -
Car06g00047 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 181 IPR000504 GO:0003723
Car06g00047 295 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 1 294 - -
Car06g00047 295 MobiDBLite consensus disorder prediction 264 279 - -
Car06g00047 295 Pfam C-terminal duplication domain of Friend of PRMT1 232 289 IPR025715 -
Car06g00047 295 Gene3D - 104 187 IPR012677 -
Car06g00047 295 SMART rrm1_1 112 184 IPR000504 GO:0003723
Car06g00047 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 188 IPR000504 GO:0003723
Car06g00047 295 PANTHER THO COMPLEX SUBUNIT 4C 1 294 - -
Car06g00047 295 CDD RRM_THOC4 111 185 - -
Car06g00047 295 MobiDBLite consensus disorder prediction 1 64 - -
Car06g00047 295 MobiDBLite consensus disorder prediction 213 279 - -
Car06g00047 295 SMART FoP_duplication_2 216 295 IPR025715 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00047 Car-Chr6 604666 609128 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00047 113 185 Eukaryotic Initiation Factors Gene Family AT2G23350 38.356 1.40e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00047 K12881 - gmx:100820344 406.371