Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car06g00039 | ATGACTACTCGAATTGCTCCTGGTGTGGGTGCCAATTTGCTTGGCCAACATTCTGCCGAGAGAAATCAAGATGCTACAGCTTACGTTGGCAATCTCGACCCTCAGATTTCCGAGGAGTTATTGTGGGAGCTTTTTGTTCAAGCTGGCCCTGTAGTTAATGTCTATGTTCCTAAGGATAGAGTTACCAATCAGCATCAAGGTTATGGATTTGTTGAATTCCGAAGTGAAGAAGATGCTGACTATGCCATCAAGGTACTTAACATGATTAAACTTTATGGAAAACCAATACGTGTAAATAAGGCATCCCAAGATAAAAAAAGCTTGGATGTCGGGGCAAACCTTTTCATTGGTAATCTGGATCCTGATGTAGATGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCAAAGATCATGAGAGATCCTGACACAGGAAATTCCCGAGGCTTTGGCTTTATCAGCTATGATTCATTTGATGCATCTGATGCAGCTATTGAGGCAATGAATGGACAGTATCTTTGCAATCGTCAAATTACAGTATCATATGCTTATAAGAAAGACACTAAAGGTGAAAGGCATGGTACTCCAGCAGAAAGAACTTTGGCTGAAAGTAATCCAACTGCACAAAAGAGCAGGCCTCATACTTTATTTGCCAGTGGTCCCCCAACCCTTCCAAACGTTGCTCAGGCTAATGGTACTGTTCCCGCTCCAGTGCCTCCTCGCCCCTTCGCTAATGGTGTTGCCCCAGCTCCTATTCCTGCCATCCATCCACCGCCTCCTCAAGCTGCAGCCTTCCAGCCTATGCCGGTACCTGGACAGCAAGTATGGCATCAACAGCAGCCAGGTCAACAAATGATGCAACACATGATGCCTCCACCTCCAATGCAGCAGTTCAGGCCACCTCACCCAATGCAGATGCCACCGCCACCACCTCCACAAGGTGTTCAGGGACCTCCAAGGCCTCTTCCCCCACCATCAGTAATGGCAAACCATCAACAATCTGTATGGAGACCACCACCACCACCTCAACAACAAGGTGGACGACCTATGGGATATCCTCAGAACTCAATGCCGCCGCCGCCACCTCCCAATAACCATGGAATGCCACCACATTCAGGTTGA | 1140 | 0.4693 | MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFDASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERTLAESNPTAQKSRPHTLFASGPPTLPNVAQANGTVPAPVPPRPFANGVAPAPIPAIHPPPPQAAAFQPMPVPGQQVWHQQQPGQQMMQHMMPPPPMQQFRPPHPMQMPPPPPPQGVQGPPRPLPPPSVMANHQQSVWRPPPPPQQQGGRPMGYPQNSMPPPPPPNNHGMPPHSG | 379 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car06g00039 | 379 | MobiDBLite | consensus disorder prediction | 278 | 292 | - | - | |
| Car06g00039 | 379 | CDD | RRM2_SF3B4 | 111 | 193 | IPR034159 | - | |
| Car06g00039 | 379 | PANTHER | TRANSFORMER-2-RELATED | 1 | 360 | - | - | |
| Car06g00039 | 379 | MobiDBLite | consensus disorder prediction | 341 | 379 | - | - | |
| Car06g00039 | 379 | CDD | RRM1_SF3B4 | 28 | 100 | IPR034158 | - | |
| Car06g00039 | 379 | MobiDBLite | consensus disorder prediction | 206 | 220 | - | - | |
| Car06g00039 | 379 | MobiDBLite | consensus disorder prediction | 194 | 220 | - | - | |
| Car06g00039 | 379 | Gene3D | - | 107 | 205 | IPR012677 | - | |
| Car06g00039 | 379 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 25 | 103 | IPR000504 | GO:0003723 | |
| Car06g00039 | 379 | PANTHER | SPLICING FACTOR 3B SUBUNIT 4 | 1 | 360 | - | - | |
| Car06g00039 | 379 | MobiDBLite | consensus disorder prediction | 299 | 332 | - | - | |
| Car06g00039 | 379 | SMART | rrm1_1 | 113 | 187 | IPR000504 | GO:0003723 | |
| Car06g00039 | 379 | SMART | rrm1_1 | 26 | 99 | IPR000504 | GO:0003723 | |
| Car06g00039 | 379 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 114 | 184 | IPR000504 | GO:0003723 | |
| Car06g00039 | 379 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 28 | 97 | IPR000504 | GO:0003723 | |
| Car06g00039 | 379 | SUPERFAMILY | RNA-binding domain, RBD | 25 | 194 | IPR035979 | GO:0003676 | |
| Car06g00039 | 379 | Gene3D | - | 16 | 106 | IPR012677 | - | |
| Car06g00039 | 379 | MobiDBLite | consensus disorder prediction | 278 | 379 | - | - | |
| Car06g00039 | 379 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 112 | 191 | IPR000504 | GO:0003723 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Car06g00039 | Car-Chr6 | 472875 | 478791 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Car06g00039 | 16 | 98 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 36.145 | 2.95e-06 | 47.4 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car06g00039 | K12831 | - | gmx:100791039 | 498.819 |