Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00017 ATGGCACCTGTTTCATTGCCTCCTGGGTTTAGGTTTCACCCTACCGACGAAGAACTTGTTTCTTATTATCTCAAAAGAAAGATTAATGGCCGTAGGATTGAGTTGGAGATCATCCCTGAAGTTGATCTCTACAAGTGTGAACCATGGGACTTGCCAGGGAAGTCATTGCTACCAGGAAAAGATTTGGAGTGGTATTTTTTCAGCCCTAGAGATAGAAAGTATCCAAATGGTTCAAGAACAAATAGAGCAACAAAATGTGGATATTGGAAGGCAACTGGTAAAGATAGAAAGGTACAGTCTGAAACTCGTTCTGTTGGAATGAAGAAAACACTTGTTTACTATAGAGGAAGGGCCCCACATGGTACTCGTACTGGTTGGGTTATGCATGAGTATCGTCTTGATGAAAGAGAATGTCAAAATCCTTCTTCTGGCTTGCAAGATGCTTATGCTCTTTGTCGTGTCTTCAAGAAGAGTACTGTTATTGTTCCTAAACTTGCTCATAATCTCTCAATTACAACTGATCACTCTCAAGGTAGAGGTGATGTTTTAGATACCTCTAATTATAATTTCATGCCATGTCATTCAACCTCTACTCAAAACCTTCATGGTCTTCTCACAAGGGATAATAATTCTACTTGGACACAATTCTTATCTGATGATTTACTCAATCTTCCAATGTCTTCTTCTTTTCCCAATTATGCTTCCACACCTTACCCTCCATCTAAGGTCGATATAGCACTAGAGTGTGCAAGGATGCAACATAGGTTTTCCATGCCTCCCTTGGAAGTGGAGGACTTCCCTCAAGTTTCTATTTCTGAGCTCAATTCAATGTGTAGTGGAAACAGAAATGAAACTGATATTTTGCAAGAAATTCTATCTGTTGCTCAAGCTTCCCAAGATTTGATTCATCAATCAAACTACTCTCATCCATTTGGTGGCAATCAAAATGATTTTACTTTTATGGTTGGAAATAATTATAATCATGTTAATGATCATATGAGTTCCATGAGATATGATGACAAAGCATGGGAAGATCCAAACACAAGATCAATTGAGATTGGAGATCTTGATGATGAATTCAAGGCAGAGAGGATGGTAGAGAATTTAAGATGGGTTGGAATGTCAAGCAATGATTTAGAGAAGAGTTTCATGGAAGAGCATCAAAAAGTTGTTCCAATTGAGGATATTTCAAGCTTCCAAACAAATAGGAAAGAGAATGAGGTGCAAGTAGAATCTGAGCAACAAAATATCAACAAAGAACTCAATGACAATGACATTGAAAATTTCTCAATGGGATTTATCAATGATGATGACCCTAATGAGAATTTTATAAATGAAGGAGCAAGTAGAAGATTGGAAACCAAAACCAGAGTATGTGAAAAGGAAAAATTGCTATGA 1398 0.3741 MAPVSLPPGFRFHPTDEELVSYYLKRKINGRRIELEIIPEVDLYKCEPWDLPGKSLLPGKDLEWYFFSPRDRKYPNGSRTNRATKCGYWKATGKDRKVQSETRSVGMKKTLVYYRGRAPHGTRTGWVMHEYRLDERECQNPSSGLQDAYALCRVFKKSTVIVPKLAHNLSITTDHSQGRGDVLDTSNYNFMPCHSTSTQNLHGLLTRDNNSTWTQFLSDDLLNLPMSSSFPNYASTPYPPSKVDIALECARMQHRFSMPPLEVEDFPQVSISELNSMCSGNRNETDILQEILSVAQASQDLIHQSNYSHPFGGNQNDFTFMVGNNYNHVNDHMSSMRYDDKAWEDPNTRSIEIGDLDDEFKAERMVENLRWVGMSSNDLEKSFMEEHQKVVPIEDISSFQTNRKENEVQVESEQQNINKELNDNDIENFSMGFINDDDPNENFINEGASRRLETKTRVCEKEKLL 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00017 465 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Car06g00017 465 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 1 330 - -
Car06g00017 465 ProSiteProfiles NAC domain profile. 6 157 IPR003441 GO:0003677|GO:0006355
Car06g00017 465 Gene3D NAC domain 15 161 IPR036093 GO:0003677|GO:0006355
Car06g00017 465 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 330 - -
Car06g00017 465 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00017 Car-Chr6 218218 220675 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00017 1 446 NAC Transcription Factor Family AT1G65910 49.580 7.34e-138 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Car06g00017 NAM 1.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00017 - - lja:Lj6g3v0392190.1 667.922