Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00015 ATGACAATGGAAGAACAACCTCCACTGCCTTTTGATAGAGCTCTTGAACAGgcaattgtatctataaagaaaggtgcttatttactgaagtgcggtggtagaggaaagccaaagctttgccctttcagactctctCCGGATGAGAGAAATTTGATTTGGTGCTCAGGGCAGCAGGAAAAGCATTTGCGATTGAGCGGCGTGACAAAAATTGTTCAAGGACATGGAAATATAAGGTCACAGAGACGAAACGAAACCGAAAAGGAGTGCCATTCGTTTTCACTGATCTATGCTAATGGAGAACGCACTCTTGATTTGATATGCAAGGATAAAGCACAAGCTGCTTCTTGGTTTGTTGGCTTGAAAGCTGTGATTTCAAGGTGTCAGCAACCGAAAGCTTTTAGTAGTTTAAGAAGCTGCAAAGGAGTGCAGAGTTGTGTCAGTAGTCCTGCTGGAATTTTACGCCGAAAGAAAAATCTTGGTCTTCTAGATGATACCTCTCAATTTATTCAGGTACACAGCGTATGTGCAAGTCCTACTTTGTCTCTTTCAGAAAGGTGTTTTTCCGATGGCATGTCATATACGTCTGATTTTTATTCCTCAGCATCGTCCCTTTCCAGCACTCATGGAAGAACAGATACCTCAGTCCCATGTTCTCCATATATTGATCAAGATACTCGTAGCAACATTAAAACCACTCTTTTCGGAAAGGAGTACAAGAAAGATTTGTCATATAGATCTATCATGCAGCTTCCTACCTCGCCGCATATAGGAAATAACAATGTATTGAAGGATGTAATGATATGGGGTGGAGGAATTGGATGCCTAGTAGGGATTGTGAATGAAAGGTTTGTCCAAAATAGTATTTACTCTTTAGTGCCAAAGTTACTTGAATCCACTGCGATGTTAGACATACAAAATGTAGCTTTAGGAGGAAACCATGCTGCTGTAGTTACAAAACAAGGCGAAGTGTACTGCTGGGGTCAAGGGAAGTGGGGAAGGTTAGGGCAAAAAATTGATATGGACATTAGCTCTCCCAAAATAGTTGATTCTCTTAGTGATGTTCACGTAAAAAATGTCGCCTGTGGCGAGTATCATACGTGTGCTTTGACAGATTCAGGAGAAGTATATACTTGGGGGAACGACGTTTCTTGTTCAGATTTGGTCGATGAAGGGAGATTCAGAAGTCAGTGGATAACACATAAACTTTCTCTACCTGTAGAAGGTATTAGTATTTCAAGTGTTGCTTGTGGAGAATGGCATACCGCGATTGTCTCTAGCTGCGGGCGGTTATTTACGTATGGAGACGGTACATTTGGAGTTCTTGGTCACGGGAATTACCAGAACATTTCTAGTCCAAAAGAAGTCGAGTCTCTTAAGGGTCTATGTGTAAGGTCTGTTGCTTGTGGAACGTGGCATACAGCTGCGATTATTGAAGTCGTCGCCGACCGTTTTAAGTACAATACTTCGATCGGCAAGCTGTTTACATGGGGCGATGGAGACGAAGGGAGGCTTGGTCATGCTGATAATGGAAACAAGGTTGTACCGACGTGTGTTTCGCAACTTGTCGACTACGATTTTGTTCAAGTATCTTGTGGAAGAATGTTGACATTAGCACTTACTAACATGGGAAAGGTTTTTGCAATGGGAAGTTCAAAATATGGACAATTGGGAAATCCACATGCTAAAGATAGATTAGTTATGGTTGAAGGACAACTTAAACAAGAGTATGTTAAAATGATATCGTGCGGTTCATATCATGTTGCTGTTTTGACATCTTCGGGGAACATGTATACATGGGGAAAAGGCGAAAACGGACAATTGGGGTTAGGTGATACTGAAGACAGATACACACCTTGTTTTGTTGAGGCTCTAAGAGACAGAAAGGTAGATACGATAACTTGCGGTCCAAGTTTCACAGTTGCAATATGTTTGCACAAACCAGTTTCTATTAGTGACCAATCCACTTGTAGTGGTTGTAGGTTACCGTTTGGCTTCACAAGGAAGAAGCATAACTGCTATAACTGCGGTCTTTTGTTTTGTCGCGCTTGTAGTAGTAAAAAGGTTAACAACGCGTCTCTAGCTCCGGTTAAGAGCAAGGCCTTTCGCGTTTGTGATCAGTGTTTTGATAGGAAGCAAGGAAGTGCAAATTCAATTATGGACTCAAAGTCTAGAAATTATAACAATCAGCAGATAGAAAATCATTGGAACAAGATTGGCAATCTCACTGATGATAGAGGAGAAACAAATGTGACAAACTGTCCTCTAATGTCTGTCAGTCAATCATGTTACCGGAAAAGCATGCCTAGTGGAAGGAAGGACTGGAAAAACCAACAAGAAAGCTGGCATGATTTAAATAATAGTTATCCTAAGTTAGGTGGTGTTTTACAATGTGGACAAGTTCCATGCACAGCACAATTTAGAATCAATTGTACAGAAAATTCAGTTGTGCATGATTCTTCAACCAAAAATAGAAAAGCTAGTGTTTCACCACTCTATGTAGAATCTAATGCAGAGTTAGATACAAAAAATTCTGATAAGTTGCTCATAGAAGAAGTTCAGAGGCTGAGAGCTGAGGCTAGGAGACTTGAAAAGCAATGTGAGCTCAAAAACCATGAAATACAAGAGTGTCAACAAAAAATTGAGGAGAGTTGGTCTGTGGCCAAAGAAGAAGCTGCTAAGTGCAAGGCAGCAAAAGATGTCATAAAGGCTTTAGCATTAAGGCTTCACACATTATCAGGAAAAGATAATGCTGGACAAGAAGGAAAAGTTGTGCTACAAGAATTTCTTCCAAATTTGGCACCTATACATACAGATATGAATAGTCCAAGAAATACCAACATGGACAGTTTATCAAGTTCCCCTATTATATTCTCCAGTGCATTAAGATCCAAATTTGGGAGAAGTATGCGCCTCAAAAATGACAAATTGACGGACAACACTAACCTTACTATACCAGAATCTCAACTAGACACCGCCGATGATTTGAAGGTCGAATTTGTCGAACAGTATGAGAATGGTGTTTACATAACATTGACAAGTTCGCCAAGCGGAGAAAAGAGCCTTAAGCGTGTGAGATTTAGCCGGAAGCAATTTTCACAGAAGGAAGCTGAAAGGTGGTGGGAAGAGAATCAAGCAAAAGTGTATCATAAGTATGAAATTGAAGGATATATAAACAGTAAGTGA 3183 0.3937 MTMEEQPPLPFDRALEQAIVSIKKGAYLLKCGGRGKPKLCPFRLSPDERNLIWCSGQQEKHLRLSGVTKIVQGHGNIRSQRRNETEKECHSFSLIYANGERTLDLICKDKAQAASWFVGLKAVISRCQQPKAFSSLRSCKGVQSCVSSPAGILRRKKNLGLLDDTSQFIQVHSVCASPTLSLSERCFSDGMSYTSDFYSSASSLSSTHGRTDTSVPCSPYIDQDTRSNIKTTLFGKEYKKDLSYRSIMQLPTSPHIGNNNVLKDVMIWGGGIGCLVGIVNERFVQNSIYSLVPKLLESTAMLDIQNVALGGNHAAVVTKQGEVYCWGQGKWGRLGQKIDMDISSPKIVDSLSDVHVKNVACGEYHTCALTDSGEVYTWGNDVSCSDLVDEGRFRSQWITHKLSLPVEGISISSVACGEWHTAIVSSCGRLFTYGDGTFGVLGHGNYQNISSPKEVESLKGLCVRSVACGTWHTAAIIEVVADRFKYNTSIGKLFTWGDGDEGRLGHADNGNKVVPTCVSQLVDYDFVQVSCGRMLTLALTNMGKVFAMGSSKYGQLGNPHAKDRLVMVEGQLKQEYVKMISCGSYHVAVLTSSGNMYTWGKGENGQLGLGDTEDRYTPCFVEALRDRKVDTITCGPSFTVAICLHKPVSISDQSTCSGCRLPFGFTRKKHNCYNCGLLFCRACSSKKVNNASLAPVKSKAFRVCDQCFDRKQGSANSIMDSKSRNYNNQQIENHWNKIGNLTDDRGETNVTNCPLMSVSQSCYRKSMPSGRKDWKNQQESWHDLNNSYPKLGGVLQCGQVPCTAQFRINCTENSVVHDSSTKNRKASVSPLYVESNAELDTKNSDKLLIEEVQRLRAEARRLEKQCELKNHEIQECQQKIEESWSVAKEEAAKCKAAKDVIKALALRLHTLSGKDNAGQEGKVVLQEFLPNLAPIHTDMNSPRNTNMDSLSSSPIIFSSALRSKFGRSMRLKNDKLTDNTNLTIPESQLDTADDLKVEFVEQYENGVYITLTSSPSGEKSLKRVRFSRKQFSQKEAERWWEENQAKVYHKYEIEGYINSK 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00015 1060 Pfam Transcription factor regulating root and shoot growth via Pin3 998 1051 IPR013591 -
Car06g00015 1060 SUPERFAMILY PH domain-like 15 124 - -
Car06g00015 1060 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 466 476 IPR000408 -
Car06g00015 1060 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 543 593 IPR000408 -
Car06g00015 1060 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 321 372 IPR000408 -
Car06g00015 1060 PANTHER F12P19.9 PROTEIN 13 1053 - -
Car06g00015 1060 PRINTS Chromosome condensation regulator RCC1 signature 304 317 IPR000408 -
Car06g00015 1060 PRINTS Chromosome condensation regulator RCC1 signature 323 339 IPR000408 -
Car06g00015 1060 PRINTS Chromosome condensation regulator RCC1 signature 373 389 IPR000408 -
Car06g00015 1060 PRINTS Chromosome condensation regulator RCC1 signature 414 430 IPR000408 -
Car06g00015 1060 PRINTS Chromosome condensation regulator RCC1 signature 430 444 IPR000408 -
Car06g00015 1060 PRINTS Chromosome condensation regulator RCC1 signature 532 550 IPR000408 -
Car06g00015 1060 PRINTS Chromosome condensation regulator RCC1 signature 589 610 IPR000408 -
Car06g00015 1060 Pfam FYVE zinc finger 651 710 IPR000306 GO:0046872
Car06g00015 1060 SUPERFAMILY RCC1/BLIP-II 263 646 IPR009091 -
Car06g00015 1060 Gene3D - 251 385 IPR009091 -
Car06g00015 1060 CDD FYVE_like_SF 655 708 - -
Car06g00015 1060 ProSiteProfiles BRX domain profile. 997 1052 IPR013591 -
Car06g00015 1060 Gene3D - 567 646 IPR009091 -
Car06g00015 1060 Gene3D - 386 566 IPR009091 -
Car06g00015 1060 Coils Coil 845 879 - -
Car06g00015 1060 Pfam Pleckstrin homology domain 16 122 IPR001849 -
Car06g00015 1060 Pfam Regulator of chromosome condensation (RCC1) repeat 543 590 IPR000408 -
Car06g00015 1060 Pfam Regulator of chromosome condensation (RCC1) repeat 491 539 IPR000408 -
Car06g00015 1060 Pfam Regulator of chromosome condensation (RCC1) repeat 321 369 IPR000408 -
Car06g00015 1060 Pfam Regulator of chromosome condensation (RCC1) repeat 428 476 IPR000408 -
Car06g00015 1060 Pfam Regulator of chromosome condensation (RCC1) repeat 593 642 IPR000408 -
Car06g00015 1060 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 650 712 IPR017455 -
Car06g00015 1060 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1053 - -
Car06g00015 1060 SMART fyve_4 644 713 IPR000306 GO:0046872
Car06g00015 1060 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 594 645 IPR000408 -
Car06g00015 1060 SUPERFAMILY FYVE/PHD zinc finger 650 727 IPR011011 -
Car06g00015 1060 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 647 722 IPR013083 -
Car06g00015 1060 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 263 320 IPR000408 -
Car06g00015 1060 CDD PH_PLC_plant-like 13 125 - -
Car06g00015 1060 Gene3D - 14 131 IPR011993 -
Car06g00015 1060 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 428 479 IPR000408 -
Car06g00015 1060 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 373 427 IPR000408 -
Car06g00015 1060 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 491 542 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00015 Car-Chr6 207911 214220 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00015 993 1056 Major Intrinsic Protein MIP AT1G31880 43.750 7.91e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00015 - - gmx:100794953 1659.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car06g00015 06 207911 214220 Car06g00015 06 207911 214220 ECH