Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car06g00014 ATGTTAATCTCTATTTACATTATTACCATTCAACTAATAACTATTCTCTTATTCACTTCACCGGCGGCTACCTCTCATTACTCATCTCCCTCACCACCAGCCGCACCATTCTACGAATCTTCCCCTGAACCTCCTTCCCTCGCCGCCGAATGGCTCTCCGCTCACGCCACTTACTACTCCGACGCCAATGACCCCATGGATGCACTGGACGGCGCGTGTGGCTACGGAGCCACTATCAAAGATGGTTACGGCCTCGCCGCAACCGCAGTCAGCGAAACTCTCTTCGTGCGTGGTCAGATCTGTGGCGCGTGTTTTGAGCTACGCTGTTTCGAAGAGGAAGTTCCATTTGACAGGCGGCGGTGTGGCTCCGGCAGTTCGATTGTTGTCACCGCTACTAATTTCTGTGCACCGAACTATGGTTTTGACGCGGAGAGCGGTGGCGGAGAGTGTAACCCTCCTAAGCAGCACTTCGTTGTTCCGGTGGAAGCCTTCGAGAAGATCGGCATTCGGAAAGGCGGTAAGTTGCCCGTTCAGTATCGCAGGATAAAGTGCAGGAGGGAAGGGGGGATGCGGTTTACAATTACTGGTTCTGGTATCTTCAATTCAGTGCTGATTAGTAATGTAGCTGGCATAGGAGACATTGTTGGTGTGAAGGTTAAAGGTTCAAGAACAGGTTGGATTCCTATGGGTCGAAATTGGGGCCAAAACTGGCATGTAAATGCGTTGCTACAAAACCAACCTCTCTCATTTGAGGTCACTAGTAGTGATGGAGTCACCATTACATCTTACAATGTAGCTCCCAAGAATTGGACCTTTGGACAAACCTTTGCAGGCAAGCAATTCGAGTCTTAG 852 0.5 MLISIYIITIQLITILLFTSPAATSHYSSPSPPAAPFYESSPEPPSLAAEWLSAHATYYSDANDPMDALDGACGYGATIKDGYGLAATAVSETLFVRGQICGACFELRCFEEEVPFDRRRCGSGSSIVVTATNFCAPNYGFDAESGGGECNPPKQHFVVPVEAFEKIGIRKGGKLPVQYRRIKCRREGGMRFTITGSGIFNSVLISNVAGIGDIVGVKVKGSRTGWIPMGRNWGQNWHVNALLQNQPLSFEVTSSDGVTITSYNVAPKNWTFGQTFAGKQFES 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car06g00014 283 Gene3D - 39 185 IPR036908 -
Car06g00014 283 SMART dpbb_1 87 179 IPR007112 -
Car06g00014 283 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 199 278 IPR007117 -
Car06g00014 283 Gene3D - 190 281 IPR036749 -
Car06g00014 283 PRINTS Expansin/Lol pI family signature 50 65 IPR007118 GO:0005576
Car06g00014 283 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Car06g00014 283 PRINTS Expansin/Lol pI family signature 91 109 IPR007118 GO:0005576
Car06g00014 283 PRINTS Expansin/Lol pI family signature 172 188 IPR007118 GO:0005576
Car06g00014 283 PRINTS Expansin/Lol pI family signature 226 240 IPR007118 GO:0005576
Car06g00014 283 PRINTS Expansin/Lol pI family signature 264 278 IPR007118 GO:0005576
Car06g00014 283 Pfam Lytic transglycolase 88 179 IPR009009 -
Car06g00014 283 SUPERFAMILY PHL pollen allergen 186 277 IPR036749 -
Car06g00014 283 PANTHER EXPANSIN-A15 22 282 IPR002963 GO:0009664
Car06g00014 283 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 70 189 IPR007112 -
Car06g00014 283 PANTHER EXPANSIN-A13 22 282 - -
Car06g00014 283 Pfam Expansin C-terminal domain 190 267 IPR007117 -
Car06g00014 283 SUPERFAMILY Barwin-like endoglucanases 47 207 IPR036908 -
Car06g00014 283 PRINTS Expansin signature 82 96 IPR002963 GO:0009664
Car06g00014 283 PRINTS Expansin signature 147 164 IPR002963 GO:0009664
Car06g00014 283 PRINTS Expansin signature 164 177 IPR002963 GO:0009664
Car06g00014 283 PRINTS Expansin signature 188 200 IPR002963 GO:0009664
Car06g00014 283 PRINTS Expansin signature 200 221 IPR002963 GO:0009664
Car06g00014 283 PRINTS Expansin signature 235 256 IPR002963 GO:0009664
Car06g00014 283 PRINTS Expansin signature 264 280 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car06g00014 Car-Chr6 176166 178444 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car06g00014 50 283 Expansin Gene Family AT3G03220 69.231 3.62e-119 340
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car06g00014 - - mtr:MTR_3g064510 417.157