Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03461 ATGTTAATACAAAGTTCTGTTCTTAGTTCAGTTGAAGCTGGTTTATGTTATGTATCTGATGATGGGAAAGATTTTCTATGTGACCGGATGCCTAGTGGTGAAAGTTTGCAGGTTTGTCTGAAATGCAATAAGTACCATGTTGACTGGTGTAGGAAAGCTGAACCAATGGAAGAGGATAGAAGGAATGCTGATGATCCTTACAGCTCAAACTTTCTAAGAAGTTCTGGTCAACCATCAACTGCAAGTATAATGACTGAAAGTACTGCACCTAATTTGATGGTATACAGGAGAAAAAAGCTACGCAAGGGAATTGCCTCTCTTTTCAAGCTAGGGCCAACTGATGTGCAGACAAGTGCCAATTTCCCTTCAGTCATAAGTTCCTCTCTGCATTTATCATCAGGTGAGGATCAAACAGCAGGCTTTCAAGTTAAGCATCAAGGTGAAATGGTAAAAGATCCTTCTATGCCTTCTGTTTTTCTTGATAGAGTAGCCAAATATACGACAAAGAAAAACTTAGGTATTGACAGTGTAAACGGTAGCTGCTCCTCTTCAAAGTCAAACATGGTGCTTGTTTCAGATTCCTTAGAAACTGAGATGGATGAAACTGGTGAATGCTCCTCTTCCAGTGTAATAGTTATGGATATCACAAAGGAAAATTTAACAGAAAAGGATTTCTGCATTAATATTTTGAGAAGCTATGGACTTCTTAGAGGAGATACTCTTACAGATAATGTGGTTTCCGTTGAAGATGCTGTTACAACTAGTAATAACTGCTGTTCCAGGTCATGCAAAATATGTGGTCATTTGGATAGCTCATTGAACATGCTTTTATGTGATAGTTGTGAAGATTCATATCATCCATCTTGCTATAATCGACGTTTGAAAAAATTACCAATTGATGAGTGGTTTTGTCATTCATGTCATGATAAAAGGCAGAAAATTCTTATGGAGACATTTATCAAATCACCAGGTATCAACAGTGAAATGGGGAAATGTAGAACTACCTCAATTACGGCTGAAATGAATCCCATACTGTTGATGTTGAGAGACACTGAGCCATATATGACTGGTGTGCGAGTTGGTAAAGGTTTTCAGGCTGAAGTACTTGACTGGTCAGGCCCAGTAAAAAGTGATGAATATGACATTCCAGGACCATTGGAAATTACTCCTTCAGAATTTTATAGACTGCAGGAAGAGAATACGAGAAATCCAACTAGACTCAGTTCCATTGGCAATTGGCTTCAATGCCAGGAGGTTATAGATAGAACCAGCAGGACAATATGCGGAAAATGGCGCAGGGCTCCCCTTTTTGAAGTGCAAACCGATGAATGGGAGTGCTTCTGTGCTGTTCATTGGGATCCATCTCATGCTGATTGTGCTGTACCTCAGGAGGTGGAGACAGATCAAGTTCTGAAGCAACTGAAGTATATAGAAATGCTGAGGCCCCGACTTGCTGCTAAACAGAGAAAATCAGATTGCACAAATAATGGTGATTGA 1497 0.3961 MLIQSSVLSSVEAGLCYVSDDGKDFLCDRMPSGESLQVCLKCNKYHVDWCRKAEPMEEDRRNADDPYSSNFLRSSGQPSTASIMTESTAPNLMVYRRKKLRKGIASLFKLGPTDVQTSANFPSVISSSLHLSSGEDQTAGFQVKHQGEMVKDPSMPSVFLDRVAKYTTKKNLGIDSVNGSCSSSKSNMVLVSDSLETEMDETGECSSSSVIVMDITKENLTEKDFCINILRSYGLLRGDTLTDNVVSVEDAVTTSNNCCSRSCKICGHLDSSLNMLLCDSCEDSYHPSCYNRRLKKLPIDEWFCHSCHDKRQKILMETFIKSPGINSEMGKCRTTSITAEMNPILLMLRDTEPYMTGVRVGKGFQAEVLDWSGPVKSDEYDIPGPLEITPSEFYRLQEENTRNPTRLSSIGNWLQCQEVIDRTSRTICGKWRRAPLFEVQTDEWECFCAVHWDPSHADCAVPQEVETDQVLKQLKYIEMLRPRLAAKQRKSDCTNNGD 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03461 498 ProSitePatterns Zinc finger PHD-type signature. 263 307 IPR019786 -
Car05g03461 498 SMART PHD_3 262 308 IPR001965 -
Car05g03461 498 PANTHER HISTONE ACETYLTRANSFERASE 26 491 - -
Car05g03461 498 SUPERFAMILY FYVE/PHD zinc finger 261 314 IPR011011 -
Car05g03461 498 MobiDBLite consensus disorder prediction 56 83 - -
Car05g03461 498 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 326 IPR013083 -
Car05g03461 498 ProSiteProfiles Zinc finger PHD-type profile. 260 310 IPR019787 -
Car05g03461 498 MobiDBLite consensus disorder prediction 67 83 - -
Car05g03461 498 Gene3D - 411 476 - -
Car05g03461 498 ProSiteProfiles Zinc finger CW-type profile. 407 467 IPR011124 GO:0008270
Car05g03461 498 Pfam PHD-finger 263 309 IPR019787 -
Car05g03461 498 PANTHER REMODELING AND SPACING FACTOR 1 26 491 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03461 263 307 C2H2 Transcription Factor Family AT3G01460 42.222 4.14e-06 47.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Car05g03461 PHD 7.5e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03461 - - gmx:100813057 781.941