Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03454 ATGAAAGCACCTAGCCCGACATTGAAGCAATCTATAGGGGATCGTCACATGATCTCACCCACCCGCCACAATAAGTTTAGAAGGAGGAAAAACAGTGGTCATTGGTGGTTTTCACCATGGATGAAGAAGGAGGTTGACTCGTATGACATGACTCACTCCTCTAATAGTCCCTACTACAAGGGTCTCACTGATCAATCTCTTGCTATTACCGACGAAGACGATGGCGACAACATCTCTTCATCACTACGTCCTATCATTCTTTCATCATCCCCCCACAGTAGTCCTTACTACAAAGGTCTTACCGATTATTCTCTTGTCCTCGATGCTTCTTGGACCACTTCTCATTCTCATCCCCATCACAATTACAATTCTAGCCCATACTATAGAGGTCTCATTGCTCTTCCTGTTCCTACCTCCCCCTCCTCTCTCTTTTCCCTCAACATCAATTTCAATACTACCACCACTCAATCACCTTCTCGTGATCTTGTTTTCTTTTTAAGTCGAGAAGATCAACCACTGATGGTGACTGAACCAGAAGCAACTTTAGAGGAAGAGATGGAGTTGATCCATCTCAATATCCAAGGGAAACCTTTGGGCGTTATTGATCAGTCGTCATTGCAAGCAACTTTGGAGGAGATAGATGATGACGATGTTGAAGGGGGGAAGCCTTTGAGGGTTAATTATGAATCGGAAACAATTTTGGACAATGATGTCGTGTTGTTGATTGAAGAGCATCAGAGGAAGCCTTTGAGGGAGAGAGTAACATCAGATTCTGAGATTGTATTGTTACAACAAGAAAATGCTGACAAAAGAGATTTGGATTTGGTGATTGAACAAGTTGGGAATGAGAATATAGACTTGGAAGAGGACCTCAGTGATTGTTGGTTGGATGGTCGAAAGGCTGTTTCTGAACAAACAGTGTCATCGGAATTACATTGTGACCACAAGTTGAAGGACGCGGCCGAGGAAGGAAATCTGTACGATTATCTGTGGGCAACCAAACACCAACCCAAGTTCTTGGCAGACTTCATCTGCAACAGAGATAAAGCACTTCAGCTGAAAGCATTGGTTAAAGAGGGATGTGGGTGTAATCATTTTATATTTGAAGGACCCTCAAATGTAGGAAAGAGATCTATGATAAGGGCTATGCTTCGAGAGGTATTTGGCGCTGACAAAGTGCAGGTCACAGAAGAATATAAACACATCAAATTGAAGGGAGAAATGGTGGAAAATCTCCAACTACGCTTACAGAAATCACTCCATCATGTTGAGGTCAATCTCTCAGAGGCAAAGGGATATGAAAAACACGTGATTGTTGATTTATTTAAGGAAACATATGGTAAGGTGATAAATAGTTCACTGCCTTGTAGCCCAGAAAACTGTCAAGCAATCATTTTGTACGAGGCGGAGAAGCTATCGTTAGAATCGCTGTTGTATATCAAGTGGCTGCTAGAAAAGTATAAAGGTTGTAGTAAGTTGTTTTTTTGTTGCTCTGATGAATCAAGGCTACAACCTATCGAATCACATTGCACCACTGTACGCCTTTCATCACCATCAACCCAACAGATTGTCAAGATTTTGGAATATATTGTACAAGAGGAAGGAATAAAATTATCACCCGAATCAATTGAGAAGATAATTTTGAGGTCCAAAAACAATCTCCGTCAAGCCATTCGTTCGTTAGAGGCCACTTTTCGAAACAAGAACTCCCTCAACGACGGTGATTTAATTTTAACCGGATGGGAGGAAGATATTTTGAATATTGCTAAAAATATAATCAGAGAGCAGAGTCCAAGACAGTTGTATGTCATTCGTAGAAAGCTTCAAAGTCTTATGATTCATGATGTTCCTCCTGACTTTATTTACAAGACTTTGGTTGCAGAGTTAACGAGTTTAGTTGATGACTCATTGTGCTCAGGGGTTGCCAAACTTGACAGCGAGTACAATAAAGGTAGTGAAATCAAATTTGAAAGTGTGAAGCATTATGCTCCAAACAAACAAGGAGCACTGGATGAAAAGAACAATGAAGTAATAAAAAAGAATGCAATGAACTACTTAAAAGTTGAAGAATTCATAGCAAAATTCATGAGCTGGTACAAGAATTCATCTAAAAGTAGTGATCATGTGCAACTTATTGCTGGAACATAA 2148 0.4036 MKAPSPTLKQSIGDRHMISPTRHNKFRRRKNSGHWWFSPWMKKEVDSYDMTHSSNSPYYKGLTDQSLAITDEDDGDNISSSLRPIILSSSPHSSPYYKGLTDYSLVLDASWTTSHSHPHHNYNSSPYYRGLIALPVPTSPSSLFSLNINFNTTTTQSPSRDLVFFLSREDQPLMVTEPEATLEEEMELIHLNIQGKPLGVIDQSSLQATLEEIDDDDVEGGKPLRVNYESETILDNDVVLLIEEHQRKPLRERVTSDSEIVLLQQENADKRDLDLVIEQVGNENIDLEEDLSDCWLDGRKAVSEQTVSSELHCDHKLKDAAEEGNLYDYLWATKHQPKFLADFICNRDKALQLKALVKEGCGCNHFIFEGPSNVGKRSMIRAMLREVFGADKVQVTEEYKHIKLKGEMVENLQLRLQKSLHHVEVNLSEAKGYEKHVIVDLFKETYGKVINSSLPCSPENCQAIILYEAEKLSLESLLYIKWLLEKYKGCSKLFFCCSDESRLQPIESHCTTVRLSSPSTQQIVKILEYIVQEEGIKLSPESIEKIILRSKNNLRQAIRSLEATFRNKNSLNDGDLILTGWEEDILNIAKNIIREQSPRQLYVIRRKLQSLMIHDVPPDFIYKTLVAELTSLVDDSLCSGVAKLDSEYNKGSEIKFESVKHYAPNKQGALDEKNNEVIKKNAMNYLKVEEFIAKFMSWYKNSSKSSDHVQLIAGT 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03454 715 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 327 571 IPR027417 -
Car05g03454 715 SUPERFAMILY post-AAA+ oligomerization domain-like 580 650 IPR008921 GO:0003677|GO:0006260
Car05g03454 715 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 101 703 - -
Car05g03454 715 CDD HLD_clamp_RFC 518 576 - -
Car05g03454 715 Gene3D - 519 579 - -
Car05g03454 715 Gene3D - 580 699 - -
Car05g03454 715 PANTHER OS10G0574500 PROTEIN 101 703 - -
Car05g03454 715 Gene3D - 329 518 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03454 Car-Chr5 79007678 79012964 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03454 330 701 Core DNA Replication Machinery Family AT5G27740 33.156 3.10e-51 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03454 K10756 - gmx:102664389 649.047