Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03452 ATGGTAGTTTGTGGAAAAGCGGTGCTATTCggagtgggagttggagtgggagtcggagtgagaCCCAAAGCCAAAGCCACACACTCTGTGTTTTTTGTTTCATGTTCCAGTGATAGTGACGAAAACACATCGACAACCACTAATTATCGGAAGAAAGCATCATCATCGAGTTTTGGAAGACTAAAAGCCCAGCAAGTGAAGGCTCTGATCCACAGAACAaagaacaacacaagacgcaaagaagaagaagaagaagaaaagaCTCCTCGACGTGCTTCTTCTTCTAATTCGAAAGGATGGGGAGATAGAGTTAGCAGTCAATCATCTTCACTGCCATTGGCGGACACGAACTTTTTCAGTCTGAAATCATTCAAAGAGATAGGATGCACTGACTATATCATCCAATCTCTCCATAACCTCTCTTTAACGCGCCCTTCCCATATACAGACATTGGCTTATCTTCTACCAATAATTCAGCGTCTCAGACAACAAGAACTACAAGGGCATAATAGTAATAATCAATCCTCTTCACAATCTCCTACACTGCTTATACTCGCACCCACAGCCGAGTTAGCTTCTCAGGTCTTGGATAATTGTCGATCGTTGGCAAAATCTGGGGTCCCATTCAAATCTATGGTTGTCACAGGTGGTTTTAAACAAAGAACTCAATTGGAAAATTTAAAGCAGGGTGTTGATGTCTTGATAGCTACTCCTGGCCGTTTTTTGTTCCTTATCAAGGAAGGCTTCTTGCAGTTATCAAATCTAAGATGCGCTGTGTTGGATGAGGTGGATATACTCTTTGGGGATGAGGACTTCGAAAAGGCTCTTCAATGCTTGATTAGTTCTTCACCAGTTGACACACAATATTTGTTTGTTACTGCAACCTTACCAAAAAATGTTTACAGCAAACTGGTTGAAGTTTTTCCTGATTGTGAAATGATCATGGGTCCTAGTATGCATCGAATAAGCTCTCGCCTTGAAGAGATTATAGTAGATTGCAGTGGGGAAGATGGACAAGAAAAAACTCTTGACACAGCATTTTTGAACAAGAAAGCTGCTCTCTTGCAGCTTGCAGAGGAGAGTCGTGTCCCAAGAACTATTGTGTTCTGTAACAAAATTGAAACATGCAGAAAAGTTGAAAATGCATTAAAACGTTTTGATAGAAAGGGAATTCGCATGCAAGTTCTACCTTTCCATTCTGCCATGACACAAGAATCACGGCTTGTTAGTATGAAAGAGTTCACACGTTCTCCATCAAAAGAAGTGTCCCAATTTATGGTTTGCACAGACAGAGCATCGCGGGGAATTGACTTCAGTAGAGTGGATCATGTAATACTTTTTGACTACCCACGTGATCCAAGTGAATATGTACGACGTGTTGGAAGAACAGCCAGAGGTGCCAGGGGACAAGGGAAGGCGTTTATCTTTGTAGTTGGGAAGCAAGTCTCCCTTGCACGCAAAATAATGGAAAGAAATAGGAAAGGTCATCCACTGCATGATGTACCTTCGGCTTATGAGATGATGAAGTAG 1530 0.3967 MVVCGKAVLFGVGVGVGVGVRPKAKATHSVFFVSCSSDSDENTSTTTNYRKKASSSSFGRLKAQQVKALIHRTKNNTRRKEEEEEEKTPRRASSSNSKGWGDRVSSQSSSLPLADTNFFSLKSFKEIGCTDYIIQSLHNLSLTRPSHIQTLAYLLPIIQRLRQQELQGHNSNNQSSSQSPTLLILAPTAELASQVLDNCRSLAKSGVPFKSMVVTGGFKQRTQLENLKQGVDVLIATPGRFLFLIKEGFLQLSNLRCAVLDEVDILFGDEDFEKALQCLISSSPVDTQYLFVTATLPKNVYSKLVEVFPDCEMIMGPSMHRISSRLEEIIVDCSGEDGQEKTLDTAFLNKKAALLQLAEESRVPRTIVFCNKIETCRKVENALKRFDRKGIRMQVLPFHSAMTQESRLVSMKEFTRSPSKEVSQFMVCTDRASRGIDFSRVDHVILFDYPRDPSEYVRRVGRTARGARGQGKAFIFVVGKQVSLARKIMERNRKGHPLHDVPSAYEMMK 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03452 509 MobiDBLite consensus disorder prediction 36 62 - -
Car05g03452 509 CDD DEADc 133 300 - -
Car05g03452 509 Gene3D - 66 314 IPR027417 -
Car05g03452 509 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 43 508 - -
Car05g03452 509 MobiDBLite consensus disorder prediction 93 110 - -
Car05g03452 509 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 43 508 - -
Car05g03452 509 Coils Coil 63 83 - -
Car05g03452 509 MobiDBLite consensus disorder prediction 36 110 - -
Car05g03452 509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 489 IPR027417 -
Car05g03452 509 Gene3D - 320 500 IPR027417 -
Car05g03452 509 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 349 509 IPR001650 -
Car05g03452 509 SMART helicmild6 377 467 IPR001650 -
Car05g03452 509 Pfam DEAD/DEAH box helicase 150 300 IPR011545 GO:0003676|GO:0005524
Car05g03452 509 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 150 314 IPR014001 -
Car05g03452 509 MobiDBLite consensus disorder prediction 75 92 - -
Car05g03452 509 Pfam Helicase conserved C-terminal domain 350 466 IPR001650 -
Car05g03452 509 SMART ultradead3 141 329 IPR014001 -
Car05g03452 509 CDD SF2_C_DEAD 326 477 - -
Car05g03452 509 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 122 150 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03452 Car-Chr5 79000181 79003353 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03452 121 488 Eukaryotic Initiation Factors Gene Family AT3G19760 25.984 3.83e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03452 K13179 - gmx:100780849 662.144