Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03441 ATGACAGTGAAAGGGAGATGTATTTTGGTGGGAATTAGAATTGATAGCAATAGCAGACACCTCCTCAATTGGGCTATAGTCAAAGTTGCTCATCCTTGGGATTCTGTTCTTGCAATCCATGTTGTTACATCTCCAGATTATGTTTCTGAAAGCAAGGCTTTGGTAGATGATTATTTAGAGGTTTATGAAGGTTTATGCGATGCAAAAAAGGTAGGTCTCTCAGGTCGTATCTCGACAGGAAGTTGTATCCGTAACATTCTCATCAGAGAGGCAAAAATCCACGGTGCCACTGCTCTAGTGGTAGGGGGTGGAGTTTCAACTGCTAAATATTGCGCGAAACGACTACCAGGAACAACTGATGTTATTGGTATCCATGGTGCAAGAATTGTCTTCAGAAGCTCCATCGATAAACAGCAACTAATAGGTGGTGCTATAGAGGATCCTAGACCGAGTCTTATGAGCACAGTGGTCCAGTCTTCATTTGGTGACTATAATGAGAAATCAAGAGACCAAGAAGAAATGAAAGTTTCATCAATATCTGATCAGAAGCTTGGGTGGCCACTTCTCCGAAGAGTGCATACAGATATCTCAAGGGACATTTCTGTAGTGCAATGGGTAATGAATTTACCAGATCGCTCAAATCACAACAATTCATCTCAAATTGAGAAAGAGAACTATCAAAAACTTTATTGTTCCAATTGCTGCAAGTGGTTCCTCTTTGAGGTTCTCAGTTCTTGCACTTGTCAATTCTCTTCAGAAAATGTGATTGGGATTGGAGGAAGCAATCGTGTGTACAGAGGAACCCTGCCTGATGGGAAACACGTGGCAGTCAAAGTTATGCAGTCATCAAAAGAAGCCTTCAAAGATTTTGACCTTGAAGTTGAAATAATGTCCTCATTGAACCATACACACATCACACCTCTACTTGGTATTTGTATTAAGGATGGCACTTTTATATCTATTTATGATTATTTCCCCCAAGGAACCTTACACCAAAATCTAAGTGGTAAGAACAAGGATGGATCTATGTTGTCATGGGAAGTCAGATTTAAGGTAGCTGTTGGGATTGCTGAAGCATTGAATTACCTGCACAACCAAACTTCCAAGCCTATTATACATAGAGATGTCAAGTCTTCCAACATTCTTCTTTCCCACGAGTTTGAGCCACAATTATCTGATTTTGGACTTGCCATGTGGGGACCAACAACTTCATCATTTGTGATACAAGATGATGTGGTAGGAACCTTTGGTTATCTTGCACCAGAATACTTCATGTATGGAAAGGTCAGTGACAAGATAGATGTTTATGCTTTTGGTGTGCTGCTACTTGAACTTATATCAGGGAGGGAACCAATCCACTTCAAAACTTGCAAGGGACACCAGAGTTTGGTTATGTGGGCAAAACCAATTATAGAGAGTGGGGATTTTAAAAGCTTATTGGATCCAAAGTTGAAAGAGAAGTTTGATGCATCTCAATTCAACAAAATGGTTCTTGCAGCATCTCTATGCATTACACGGTCTGCGCGACTTCGTCCTACAATGAATCGGGTATTGAAGATCTTAAAAGGATGTGATGAGAATGTTGAAAACATATTTAAGTCTCATGAGAGTGATCATGATCATTATTCAGAAAATGAAGAAAATCTTGATGAAGAAGTCTATCCAAATTCAAGTCCAGAGTTGCACCTTAGCCTTGCATTACTTGATGTTGACAATGATACTACATCATATAGTAGTATAGAGAACATCAATAATAATGAACAATTGAAAGAACGATGGAGCAGATCATCTAGTTTCAGTTAG 1803 0.3938 MTVKGRCILVGIRIDSNSRHLLNWAIVKVAHPWDSVLAIHVVTSPDYVSESKALVDDYLEVYEGLCDAKKVGLSGRISTGSCIRNILIREAKIHGATALVVGGGVSTAKYCAKRLPGTTDVIGIHGARIVFRSSIDKQQLIGGAIEDPRPSLMSTVVQSSFGDYNEKSRDQEEMKVSSISDQKLGWPLLRRVHTDISRDISVVQWVMNLPDRSNHNNSSQIEKENYQKLYCSNCCKWFLFEVLSSCTCQFSSENVIGIGGSNRVYRGTLPDGKHVAVKVMQSSKEAFKDFDLEVEIMSSLNHTHITPLLGICIKDGTFISIYDYFPQGTLHQNLSGKNKDGSMLSWEVRFKVAVGIAEALNYLHNQTSKPIIHRDVKSSNILLSHEFEPQLSDFGLAMWGPTTSSFVIQDDVVGTFGYLAPEYFMYGKVSDKIDVYAFGVLLLELISGREPIHFKTCKGHQSLVMWAKPIIESGDFKSLLDPKLKEKFDASQFNKMVLAASLCITRSARLRPTMNRVLKILKGCDENVENIFKSHESDHDHYSENEENLDEEVYPNSSPELHLSLALLDVDNDTTSYSSIENINNNEQLKERWSRSSSFS 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03441 600 SUPERFAMILY Protein kinase-like (PK-like) 229 521 IPR011009 -
Car05g03441 600 CDD USP_Like 8 116 - -
Car05g03441 600 Gene3D Phosphorylase Kinase; domain 1 211 324 - -
Car05g03441 600 ProSitePatterns Serine/Threonine protein kinases active-site signature. 371 383 IPR008271 GO:0004672|GO:0006468
Car05g03441 600 Gene3D Transferase(Phosphotransferase) domain 1 325 550 - -
Car05g03441 600 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 5 591 - -
Car05g03441 600 PANTHER OS01G0253100 PROTEIN 5 591 IPR045271 GO:0004714|GO:0006468
Car05g03441 600 Pfam Protein kinase domain 251 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g03441 600 ProSiteProfiles Protein kinase domain profile. 250 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g03441 600 SMART serkin_6 250 520 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g03441 600 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 7 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03441 Car-Chr5 78898008 78901085 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03441 231 529 Trihelix Transcription Factor Family AT5G38560 41.639 5.25e-73 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Car05g03441 Pkinase 2.9e-39 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03441 05 78898008 78901085 Car05g03441 05 78898008 78901085 ECH