Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03434 ATGGAAGGGGATGCGAGGGATTTGTGTTTGTCTTTGGAGTACCTTCTTAGAGATTCTTCTGTAGATACTAATTTTCTTAACCAACTCATCTCTACAATGTCACCTTCCCTCATCGATTTTCGTATGATGAAGAACTTTATCCTTCGAAACCTTCAAGACGACTTCTTGTCCAATGCTTCTAATCCTGAACACTTGCTTGAAATTCTTGAGGTTCTAGAAGAAATCCTTCGTCGTGAATCTGAATCTGAAACTTCTTCAAACCCTATCACCCCCGCCATGAAATCTGTTTATTGCGGCGTTGCAGTGGATTGTACACTCAGGTTCATTGAAGCGGATAAATATAACCCTGCCTACCGCAAAACAGTAGAGAGGATATGGAGAGATAGGGTTCGTTACATGGAAACGTCGTCGTCTTCTGCTGGTGGAAGTCTTTTGTTTTCACCTGATTTGGAACGCTGGAAAGCTGAAATCGAAACTTCCCTTTTGGATCCCTTAGTCGTTGAAAAGCTTGCTACTATGCCAAATACTCGAAGGGACGCTTTCAAAAAGATCAAACTTTGTTTGACTGAAGCTTGGGGAAACCTTGGTCCTACTTTGCTTCAAACCACCTTTCAGTTGCATAACAAGGAACTACAACAACACAAAGGGTCTTCTGTAGAAGTTCAGAAAAACAATGAGAAGCTGAAAGGGAAGCGTATTATGACTGCAGTTGAGGAAATTGATCTATCAGCCTCTTGTAGCAAAGCTAGCTATGTGCTAATTAATGAGGGTCCAAATACTACTGCAGCTGAGGAAATTGATCCACCACCCGCTTGTAGCAAAGTTAACTATGTGCTAATTAACGAGGTCCGAAATACTACTGCAGCTCAGGAAATTGATCCACCACCCACTTGTAGCAATGTTAACTATGTGCTAATTGATCCATCAGCCACTTGTAGCAAAGTTAACTATGCTCTAATTAACATGGTACCACCTGATTTCGCAATTGAGGACATGAATCAGGAGCCACAAACAGAAAACCAGAGGTCAGAAGCAAATGTAGCCAACCCACAAGCATGCCATGGTATTAATATGAGTGAGGCTAATCTTACAAGGACAACTACTGTCCATCAGAATGATGTTTATAACTCTAGCATGTTGGAACCAAATCGTGCTACTCGTACTCATGAGGGAGGAACATCAAATAAAAGAAGTAGAAACAATTTGCCTAATCGGGAGAGGAGGAATCCTCCTTCGGTGAAGAACTTTGATCCCACAAAAATCAGAAAAAGGAGAAAACCAAAAAGATGGAGTAAATCAGAGGTAGAAACTTTAAGGGCTGCTGTAACAAAACATGGCATAGGAAACTGGAAAGTAATCTTGAATTTGTATACATTCGGAACGAGAACTGAAGTAGATTTGAAAGACAAGTGGAGAAATTTGTCAAAGATCGTACGCAAATAA 1443 0.4075 MEGDARDLCLSLEYLLRDSSVDTNFLNQLISTMSPSLIDFRMMKNFILRNLQDDFLSNASNPEHLLEILEVLEEILRRESESETSSNPITPAMKSVYCGVAVDCTLRFIEADKYNPAYRKTVERIWRDRVRYMETSSSSAGGSLLFSPDLERWKAEIETSLLDPLVVEKLATMPNTRRDAFKKIKLCLTEAWGNLGPTLLQTTFQLHNKELQQHKGSSVEVQKNNEKLKGKRIMTAVEEIDLSASCSKASYVLINEGPNTTAAEEIDPPPACSKVNYVLINEVRNTTAAQEIDPPPTCSNVNYVLIDPSATCSKVNYALINMVPPDFAIEDMNQEPQTENQRSEANVANPQACHGINMSEANLTRTTTVHQNDVYNSSMLEPNRATRTHEGGTSNKRSRNNLPNRERRNPPSVKNFDPTKIRKRRKPKRWSKSEVETLRAAVTKHGIGNWKVILNLYTFGTRTEVDLKDKWRNLSKIVRK 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03434 480 MobiDBLite consensus disorder prediction 373 434 - -
Car05g03434 480 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 422 480 IPR017930 -
Car05g03434 480 Pfam Myb-like DNA-binding domain 428 474 IPR001005 -
Car05g03434 480 PANTHER MYB TRANSCRIPTION FACTOR 5 476 - -
Car05g03434 480 Gene3D - 419 478 - -
Car05g03434 480 CDD SANT_TRF 430 476 - -
Car05g03434 480 ProSiteProfiles Myb-like domain profile. 422 475 IPR001005 -
Car05g03434 480 MobiDBLite consensus disorder prediction 373 389 - -
Car05g03434 480 MobiDBLite consensus disorder prediction 390 404 - -
Car05g03434 480 PANTHER MYB TRANSCRIPTION FACTOR 5 476 - -
Car05g03434 480 SMART sant 426 477 IPR001005 -
Car05g03434 480 SUPERFAMILY Homeodomain-like 424 475 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03434 Car-Chr5 78829053 78831662 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03434 381 474 Single Myb Histone (SMH) Gene Family AT1G15720 43.000 1.37e-09 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Car05g03434 Myb_DNA-binding 2.6e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03434 - K11111 cam:101499493 910.212