Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03423 ATGGACGGCGGCGATAACGATTCCCGACAGGGAAGTACGTTAGTTATTCATCAAACCACAGAACAACTTATCGCCAGGTGCATAGCTCCCGTTAAAAAGGACTTCCTTCGCCCTCCTCCCGTTCGAACTTCCTCTCAAAACGACGACATTCCCATCCCAAACGACAAACCCCCTGTTCTCGCAAAGGAGAAGAAGTCTAAACGACAACTCAAACGCGAACGTCGTCAGGATCAAAAATCAACACGAAACTTGTGTCCAGAAATTTCCAAATCTGGTGATGTTAATTCGTGTCGTTATAAAGACAAGTGCCGTTTCAGCCATGATATTGAAGCATTCAAGGCACAGAAATTGGCTGATTTGGAGGGGGAGTGTCCTTTCTTGAAATCTGAAGGGCCATGTCCTTATGGATTATCGTGTAGATTTTTAAATACGCATGAAGAGAGTACTGTGTCTATACCTTCTTCTAATGGATTGAAGATAAGGTCTGAGGTTAATGGTTTTAGCAAAGATGTTCAGAAACTTTTGTGGAAAAACAACATGACATTTCCCAAAGCTGATGCCAAGCTCAAATCTCTTGGCCTCTTTAAAATGTTGCAGGGACAGTCGAAGTCAAAAGTGAATGACATGGAAAACAAAGATGGTGGTGACAAATGCGATCAGTCTGAGGACAATGGCTCTTGTGCAGTTACATCTGACTTGGAAAACAAAGATGACGATGATAAATGCCATCAGTCTGATGACGATGGCTCTTGTGGGGTTCCCCCTGAATCAGGTTCTAAGTTAGAATGCTCTGAAGAAGTTATAAAAGATGATGATAATAATGGAGAACTTGAATCTGATgtactctgtccccagaagagaagaaaaacTGCTGAAAGTGGTGATGGTGAGAAGATAGAAAATGAAGGTGTGAGTGTTACTGACCAAAATGTTGATGGAAGCTGCATAAGATCTGAACCAGAGGCAGGGACTGAAGCTATAACCCCAGAAACTGATCTAAGCTTGAAATTGCACTCACGTGAAAAGAAGCTTATTGATTTCAGGGAAAAGTTGTATCTTGCACCCTTGACCACTGTTGGAAATCTCCCTTTCCGTAGAGTTTGCAAAGTATTAGGAGCTGATGTAACATGTGGTGAAATGGCAATGTGCACAAATCTTTTGCAGGGTCAAGCTTCAGAATGGGCATTGCTGAGACGCCATTCATCTGAAGATTTGTTTGGTGTACAAATCTGTGGGTCATATCCAGATACTGTAGCTCGAACAGTTGAACTAATAGAAAAGGAATGTACAGTAGATTTCATTGATATAAATATGGGTTGCCCTATTGACATTGTTGTGAATAAGGGTGCTGGATCAGCTCTTCTTACCAAACCAATGCGGATGAAAAGTGTTGTTGAAGTAGCTTCTGGCACAGTTGATATACCGATAACTATCAAGGTACGGACAGCTTATTTTGAAGGGAAGAATCGCATTGACTCTCTTATAGCAGACATTAGCTCCTGGGGAGCCAGTGCGGTGACAATACACGGTAGGTCACGCCAACAACGCTATAGCAAGCTTGCTGACTGGGATTACGTATATCAGTGTACCAAGAAAGCCCCTAATAATTTGCAAGTAGTTGGAAACGGAGATGTTTTTTCATTTGTAGACTGGAACATCCACAAAACACAATGTCCTGAACTTGCTACATGCATGATTGCCCGTGGTGCACTGATTAAACCTTGGATATTTACGGAGATTAAAGAACAAAGACATTGGGACATTAGTTCTGGCGAGCGACTAAATATTCTCAAAGATTTTGTGCATTTTGGTCTTCAACATTGGGGTTCAGATACAAAAGGGGTGGAGACAACAAGGCGGTTCTTGTTGGAGTGGCTTAGCTACACTTGTAGGTACATACCTGTTGGTCTTTTGGATGTGGTTCCACAACGAATAAATTGGCGTCCTCCATCGTACTATGGGCGAGATGACCTTGAGACATTGATGGCCTCAGACTCTGCAGCTGACTGGGTACGATTATCAGAGATGGTACTTGGCAAAGTTCCAGATGGCTTTACTTTTGCACCAAAGCATAAATCAAATGCTTACGACAGAGCTGAAAATGGTTAA 2109 0.4173 MDGGDNDSRQGSTLVIHQTTEQLIARCIAPVKKDFLRPPPVRTSSQNDDIPIPNDKPPVLAKEKKSKRQLKRERRQDQKSTRNLCPEISKSGDVNSCRYKDKCRFSHDIEAFKAQKLADLEGECPFLKSEGPCPYGLSCRFLNTHEESTVSIPSSNGLKIRSEVNGFSKDVQKLLWKNNMTFPKADAKLKSLGLFKMLQGQSKSKVNDMENKDGGDKCDQSEDNGSCAVTSDLENKDDDDKCHQSDDDGSCGVPPESGSKLECSEEVIKDDDNNGELESDVLCPQKRRKTAESGDGEKIENEGVSVTDQNVDGSCIRSEPEAGTEAITPETDLSLKLHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGSYPDTVARTVELIEKECTVDFIDINMGCPIDIVVNKGAGSALLTKPMRMKSVVEVASGTVDIPITIKVRTAYFEGKNRIDSLIADISSWGASAVTIHGRSRQQRYSKLADWDYVYQCTKKAPNNLQVVGNGDVFSFVDWNIHKTQCPELATCMIARGALIKPWIFTEIKEQRHWDISSGERLNILKDFVHFGLQHWGSDTKGVETTRRFLLEWLSYTCRYIPVGLLDVVPQRINWRPPSYYGRDDLETLMASDSAADWVRLSEMVLGKVPDGFTFAPKHKSNAYDRAENG 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03423 702 MobiDBLite consensus disorder prediction 202 305 - -
Car05g03423 702 Gene3D - 74 156 - -
Car05g03423 702 Gene3D Aldolase class I 345 588 IPR013785 -
Car05g03423 702 MobiDBLite consensus disorder prediction 206 220 - -
Car05g03423 702 Pfam CCCH-type zinc finger 84 108 IPR041367 -
Car05g03423 702 ProSitePatterns Uncharacterized protein family UPF0034 signature. 434 452 IPR018517 GO:0008033|GO:0017150|GO:0050660
Car05g03423 702 MobiDBLite consensus disorder prediction 35 87 - -
Car05g03423 702 Coils Coil 60 80 - -
Car05g03423 702 MobiDBLite consensus disorder prediction 232 247 - -
Car05g03423 702 ProSiteProfiles Zinc finger C3H1-type profile. 79 110 IPR000571 GO:0046872
Car05g03423 702 MobiDBLite consensus disorder prediction 262 302 - -
Car05g03423 702 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 29 702 - -
Car05g03423 702 Pfam Dihydrouridine synthase (Dus) 353 588 IPR035587 -
Car05g03423 702 ProSiteProfiles Zinc finger C3H1-type profile. 123 148 IPR000571 GO:0046872
Car05g03423 702 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 29 702 - -
Car05g03423 702 CDD DUS_like_FMN 350 585 IPR035587 -
Car05g03423 702 SMART c3hfinal6 120 147 IPR000571 GO:0046872
Car05g03423 702 SMART c3hfinal6 80 109 IPR000571 GO:0046872
Car05g03423 702 SUPERFAMILY FMN-linked oxidoreductases 350 663 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Car05g03423 Dus 2e-49 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03423 K05544 - gmx:100783494 1100.12