Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03417 ATGGATGCCGAAGTCGATGAAGCTCCACGTAACCAATCTCCTCCTCCGCTTCAACAACCCTCCGATTTGTCACCTCCGCAGCCGCAGAACCTTCCAATCAATGGCGATATTCACGACTCTCTTTCTAATTTCCCCAACGACGGAGGCCTTAATGCCGAGATTACAGAGGAGACGAATGATGACGCCATGGAAACAGCGGTTGTTTTTGATCACGTGGTAACCATGGATGTCGGTGAATTGCATGTGGTGGATGGTGAAATTGTTGCGGAGGAGAAGGGGAATGATGGAACCGACGTTGATTTGGAGCCTGTGAATGTGGAAGGGGACGAACTCAATTTAAAAATTGTGGAGGAGGAGGTTCAAGTTAGGGAAGATAACACATGTGATGCTCCTTTGATGGTAGAGCAAGAACATCAAGGAGACGCTGAACAACAAGAGCAAGTGCaaggagaaggagatggagaaggagaaggagaaagagaaggagaaggagaaggagaaggagaagaggaagtggaaggagaaCAACAACTTCACCATCaagtagacgatgaaaaacaagagcaagagcaagaacaagaagaggatgaagaagaaggagagcaacaacatcaagaagatgatgaagaacaagagcaagagcaagagcaagatgaggacgaagaagaagaagaagaagCTGATGGTGATGGTGGTTTTGCAGAAGATAAAGAGGTTGCTGAGGAGATGGAGGTGGTTGAGGAGGCGAGTGTTGGGAAAAGGAAGCGTGGACATGGGAAGAATTCAAAGTCCAGTGGGAGAGTTCCTTCGAGGAAAAAGATGGAAGAGGACGTCTGTTTCATTTGCTTCGATGGGGGTGACCTTGTGCTCTGTGACCGCAGGGGTTGCCCCAAGGCTTACCACCCTTCTTGTGTTAATCACGACGAGGCATTCTTTCAAACCAAGGGAAAGTGGAATTGTGGTTGGCATATTTGCAGCAACTGTGAGAAGAATGCATTTTATATGTGCTATACATGTACATTCTCTTTGTGCAAGGGTTGTATCAAAGATGCTGTTATGTTATGTGTTAGGGGAAACAAGGGCTTTTGCGAGACATGCATGAGAACAGTAATGTTGATTGAACAGAATGAGCAGGGAAACAACATGGTACAAGTTGATTTTGATGACAAAAATAGCTGGGAATATCTCTTCAAGGATTACTATGTAGATCTAAAAGGAAAGCTATCTCTAACATTTGATGAACTCAGTCAAGCTAAAAACCCTTGGAAGGGATCTGATATGCTTCCTTCTAAAGAGGAATCGCCAGATGAACTTTTTGATGCCACTAATGATAGAGGATCAGATTCTGATAGCTCATATGTGAACGCAGATTCGAGTCGACCTAAAAAAAGGAAGTCCAAGAAACGGGCAAAGTCTCGATCCAAAGAAGGGAATTCATATAGTGCAGTGACAGCGCATCGTGCTGATGGGACATCTACAGAAGAAAGCACTGAGTGGGCTTCAAAGGAGCTTTTGGAGTTTGTTATGCACATGAGAAATGGAGATAAATCTATGTTGTCACAGTTTGATGTGCAGGCTCTTTTGCTAGAGTATATTAAAATAAATAAGCTTCGAGATCCTCGCCGAAAAAGTCAAATCATTTGTGACGTGAGGCTTCAAAATTTGTTTGGTAAACCAAGAGTTGGACATTTTGAAATGTTAAAACTTCTTGAGTCCCATTTCCTTATCAAAGAGGATTCTCAGGCTGAAGATCTCCAGGGGAGTGTCGTTGATACTGAAATTAGTCATTTGGATGGTGATGGCAATGGCGATGCATTTATGAAAGCTGGAAAAGATAAGAAACGTAAAAGTCGTAGAAAGGGCGATACACAATCTAAAGTTGATGATTATGCGGCTATTGATAATCATAATATTAATTTAATTTATCTAAGGCGCAATTTAGTGGAAGATTTACTTGAAGATACAGAGAAGTTTCATGATAGTGTTGTTGGTTGTTTTGTGAGAATAAGAATTTCTGGTAGTGGTCAGAAGCAAGATTTGTATAGACTGGTTCAGGTTGTAGGTACATGCAAAACAGCAGAGTCATATAAAGTTGGTAAAAGGATGACAGATATCTTGCTAGAAATCTTAAATTTAAACAAAACAGAGATTGTATCAATGGATATCATCTCAAATCAGGAGTTCACAGAGGATGAGTGCAAGCGTCTCCGCCAAAGCATAAAATGTGGCCTCATAAATCGGATGACTGTGGGTGACATTCAGGACAAAGCTATTGCACTTCAGGCCGTTAGAGTAAAAGATTGGCTAGAAACAGAGATAGTGCGGCTAAGTCATCTTCGTGATAGAGCTAGTGAGAAAGGACGCAGAAAAGAGCTCCGAGAATGTGTAGAGAAATTGCAGCTTTTGAAAACCCCTGAAGAACGGCAACGTAGATTGGAGGAAATTCCAGAAATACATGTGGATCCAAAGATGGATCCAAGTTATGAGTCTGATGAAGGAGATGAAATGGAGGATAAAAGACAAGAAAACTTCATGAGACCAAGAGGGTCTACTGTGTTTGGAAGGAGGGGTAGAGAAACTGTTTCGCCAAGAAGTGGTTCCATTTCAAGTGATTCTTGGAGTGGAACAAAGAATTACTCTCATGTGAATCAGGAACTCAACAGAAATTTATCTAATAAGGGATTTTCAGTCAAAGGTGATGATGTCTCTAATGATAGTGAGATTTTAAATGGTGCTCAATTGCACCAGGGAAGAGATAGGGAATCACATCTATCTAATAGCTGGGAGAGGCAAAAGCTAATGTCTTCAAGCATGGAGAGTGGTGCTAAAAATATCCAGCCATTGGTAACATCTGAGTCTTTTTCTACCGCTGTGTTAGAAGCTGCTGCAGTCCCAGCTGTGAAAGCTAACGAAACTGAAAAGATGTGGCATTATCAGGATCCTTCTGGAAAAATTCAGGGACCATTTTCCATAGTGCAACTTCGCAAATGGAATAATACAGGATACTTTCCCGCTGATTTGAGAGTTTGGAGAACCACCGAGAGACAAGATGAATCTATACTCTTAACAGATGTCTTTGCAGGGAAATTTTCAAATGAACCATCCATAGTGGATAAAACTCCTCCCAAGGCTCAAATAGTGCATGATGTACATCACTCGTCCTCATTCTCTGGGAAGTCTCCTTTGGTAGCTCAAGGTTTAGCCAGTAAAATTTCCCCATTGGTAGTTGAGGTCCCCAAGAATCCTGGAAATGGTTGGGGTTCTGATGCTGTTGTCAGAAATGAATCAACAAATCTTCCTTCACCTACTCCCCAAACTGCTTCAGGTGGGTTGAAGGGGATTGCTTTTGAAAATAATTGGTCACCAACACCTGTCCAGTTGACTGGGCCTGTCTTGGGAAATTCGCAACTTCAAGCAACAGAATTGGCACAGGTTGTTTCAAACATGCAAAACCAGACTGCGAGTGGCCATAACTCTCGTGCTGAAGCTCAAGTGTGGGGTGGTCCGTCTGTGGTTCCAAATAATTCTGCTACCATGCCTGCCCAGCCAGCTTCTCATGGTCTATGGGGTGATGCTTCATCTGTTCAGCAGAACTCTGCTTCATTTACTACCGGAAATCCAACTGGGAGTTTATCCACACATGGTTTTCATGGCATGATGACTGCACCTGAGTCGTGGAGACCACAAGTTCCAAGTAGTCAAGCAAACATCATGGCCCCACCACCGCCTAACATACCCTGGGGCATGAACATGCCAGGAAATCAGAATATTAGCTGGAATGGGTCTCTACCCGCCAACATGAATGTCAACTGGATGCCGCCTGCACAAGTGCCTGCACCTGGAAATGCAAATCCAGGATGGGCAGCTCCTACGCAGGGGATACCTCCAGTAAATTCAGTTAGCTGGGCAGCACCTGGTCAAGGTCTTCCCAATGTGAATGCAAATGCAGGTTGGGCTGTGCCTAGTCAAGGGGTAGCACCAGGAAATGCCAATCCTGCTTGGGCTACATCTGCTGGGAACCCAGGCATGCGTGGAAATGAACAAAGTCATAATGGAGACAGGTTTAACAACCAAGGGGATCGCGGTAGCCGTGGTGGAGGTAAATCTTGGAACAGACAGTCATCGTTTGGAAGTGGAGGTGGAGGCAGAGGGGGCTCTTCTAGGTCTTCCGGTGGTGGGGGACAAAGAGGAGTCTGCAAGTTTTATGAAAGTGGAAATTGCCGGTGGGGAGCTTCCTGTGATTATCAACACAAGTAA 4257 0.4165 MDAEVDEAPRNQSPPPLQQPSDLSPPQPQNLPINGDIHDSLSNFPNDGGLNAEITEETNDDAMETAVVFDHVVTMDVGELHVVDGEIVAEEKGNDGTDVDLEPVNVEGDELNLKIVEEEVQVREDNTCDAPLMVEQEHQGDAEQQEQVQGEGDGEGEGEREGEGEGEGEEEVEGEQQLHHQVDDEKQEQEQEQEEDEEEGEQQHQEDDEEQEQEQEQDEDEEEEEEADGDGGFAEDKEVAEEMEVVEEASVGKRKRGHGKNSKSSGRVPSRKKMEEDVCFICFDGGDLVLCDRRGCPKAYHPSCVNHDEAFFQTKGKWNCGWHICSNCEKNAFYMCYTCTFSLCKGCIKDAVMLCVRGNKGFCETCMRTVMLIEQNEQGNNMVQVDFDDKNSWEYLFKDYYVDLKGKLSLTFDELSQAKNPWKGSDMLPSKEESPDELFDATNDRGSDSDSSYVNADSSRPKKRKSKKRAKSRSKEGNSYSAVTAHRADGTSTEESTEWASKELLEFVMHMRNGDKSMLSQFDVQALLLEYIKINKLRDPRRKSQIICDVRLQNLFGKPRVGHFEMLKLLESHFLIKEDSQAEDLQGSVVDTEISHLDGDGNGDAFMKAGKDKKRKSRRKGDTQSKVDDYAAIDNHNINLIYLRRNLVEDLLEDTEKFHDSVVGCFVRIRISGSGQKQDLYRLVQVVGTCKTAESYKVGKRMTDILLEILNLNKTEIVSMDIISNQEFTEDECKRLRQSIKCGLINRMTVGDIQDKAIALQAVRVKDWLETEIVRLSHLRDRASEKGRRKELRECVEKLQLLKTPEERQRRLEEIPEIHVDPKMDPSYESDEGDEMEDKRQENFMRPRGSTVFGRRGRETVSPRSGSISSDSWSGTKNYSHVNQELNRNLSNKGFSVKGDDVSNDSEILNGAQLHQGRDRESHLSNSWERQKLMSSSMESGAKNIQPLVTSESFSTAVLEAAAVPAVKANETEKMWHYQDPSGKIQGPFSIVQLRKWNNTGYFPADLRVWRTTERQDESILLTDVFAGKFSNEPSIVDKTPPKAQIVHDVHHSSSFSGKSPLVAQGLASKISPLVVEVPKNPGNGWGSDAVVRNESTNLPSPTPQTASGGLKGIAFENNWSPTPVQLTGPVLGNSQLQATELAQVVSNMQNQTASGHNSRAEAQVWGGPSVVPNNSATMPAQPASHGLWGDASSVQQNSASFTTGNPTGSLSTHGFHGMMTAPESWRPQVPSSQANIMAPPPPNIPWGMNMPGNQNISWNGSLPANMNVNWMPPAQVPAPGNANPGWAAPTQGIPPVNSVSWAAPGQGLPNVNANAGWAVPSQGVAPGNANPAWATSAGNPGMRGNEQSHNGDRFNNQGDRGSRGGGKSWNRQSSFGSGGGGRGGSSRSSGGGGQRGVCKFYESGNCRWGASCDYQHK 1418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03417 1418 Coils Coil 172 228 - -
Car05g03417 1418 ProSiteProfiles Zinc finger C3H1-type profile. 1393 1418 IPR000571 GO:0046872
Car05g03417 1418 MobiDBLite consensus disorder prediction 173 187 - -
Car05g03417 1418 CDD SWIB-MDM2_like 499 574 - -
Car05g03417 1418 PANTHER UNCHARACTERIZED 1193 1417 - -
Car05g03417 1418 PANTHER UNCHARACTERIZED 106 1198 - -
Car05g03417 1418 MobiDBLite consensus disorder prediction 862 877 - -
Car05g03417 1418 MobiDBLite consensus disorder prediction 13 27 - -
Car05g03417 1418 SUPERFAMILY GYF domain 967 1026 IPR035445 -
Car05g03417 1418 Pfam Plus-3 domain 637 740 IPR004343 GO:0003677
Car05g03417 1418 MobiDBLite consensus disorder prediction 601 625 - -
Car05g03417 1418 CDD Bbox1 324 350 - -
Car05g03417 1418 Pfam GYF domain 976 1017 IPR003169 GO:0005515
Car05g03417 1418 MobiDBLite consensus disorder prediction 1323 1395 - -
Car05g03417 1418 ProSiteProfiles Plus3 domain profile. 632 765 IPR004343 GO:0003677
Car05g03417 1418 MobiDBLite consensus disorder prediction 188 232 - -
Car05g03417 1418 ProSitePatterns Zinc finger PHD-type signature. 279 339 IPR019786 -
Car05g03417 1418 MobiDBLite consensus disorder prediction 233 255 - -
Car05g03417 1418 MobiDBLite consensus disorder prediction 122 269 - -
Car05g03417 1418 MobiDBLite consensus disorder prediction 429 444 - -
Car05g03417 1418 MobiDBLite consensus disorder prediction 849 877 - -
Car05g03417 1418 ProSiteProfiles GYF domain profile. 973 1027 IPR003169 GO:0005515
Car05g03417 1418 ProSiteProfiles SWIB/MDM2 domain profile. 493 576 IPR003121 -
Car05g03417 1418 MobiDBLite consensus disorder prediction 28 53 - -
Car05g03417 1418 CDD GYF 973 1028 IPR003169 GO:0005515
Car05g03417 1418 MobiDBLite consensus disorder prediction 1329 1393 - -
Car05g03417 1418 MobiDBLite consensus disorder prediction 821 840 - -
Car05g03417 1418 Pfam SWIB/MDM2 domain 501 574 IPR003121 -
Car05g03417 1418 Gene3D SWIB/MDM2 domain 487 584 IPR036885 -
Car05g03417 1418 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 1193 1417 - -
Car05g03417 1418 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 19 106 1198 - -
Car05g03417 1418 SUPERFAMILY SWIB/MDM2 domain 497 575 IPR036885 -
Car05g03417 1418 MobiDBLite consensus disorder prediction 148 172 - -
Car05g03417 1418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 370 IPR013083 -
Car05g03417 1418 Gene3D - 634 762 IPR036128 GO:0003677
Car05g03417 1418 MobiDBLite consensus disorder prediction 423 495 - -
Car05g03417 1418 SUPERFAMILY FYVE/PHD zinc finger 275 328 IPR011011 -
Car05g03417 1418 CDD PHD5_NSD 278 323 - -
Car05g03417 1418 Gene3D - 974 1033 IPR035445 -
Car05g03417 1418 SMART gyf_5 974 1029 IPR003169 GO:0005515
Car05g03417 1418 SMART swib_2 508 579 IPR019835 -
Car05g03417 1418 ProSiteProfiles Zinc finger PHD-type profile. 276 342 IPR019787 -
Car05g03417 1418 MobiDBLite consensus disorder prediction 476 495 - -
Car05g03417 1418 MobiDBLite consensus disorder prediction 1 59 - -
Car05g03417 1418 SUPERFAMILY Plus3-like 633 762 IPR036128 GO:0003677
Car05g03417 1418 SMART PHD_3 278 324 IPR001965 -
Car05g03417 1418 SMART rtf1 632 742 IPR004343 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03417 Car-Chr5 78681351 78692163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03417 276 363 PHD Transcription Factor Family AT5G36670 34.000 4.78e-07 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Car05g03417 Plus-3 2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03417 - - mtr:MTR_3g117490 1801.18