Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03413 ATGCCAATAATAGTCAAGCCCCACCACGTGACCAAATGTCACACGCATGCTGGATCACCCTTTTACAAAGCAACAAGATTTGAACTCCATAATATCGTTTCTCCTTCGATTCTTCTTCTTCACAGAAAAATGGAGTTTGCTGTTGCAAAAGCTTTGAAACCGAGTTTAAGGAGGGAGTTTGTTTTTCAACAAACGCTAGGCGAGGAAGTTTTTTGCTTGAACACGAACACGGTGGTTACTGGTGAGGATTTCTCCGTCGACGACCTCCTTGACTTCTCTAACAACGATACTCTTCACCATGAACACCACAACGACGACGAAGAAAAAGATAGTTTATCTCTTTCCTCTCACTCACTCTCAGATGATAGTAACTCCAATTCCACCGACGCTTCCTATGATTCTATTTTCTCAACTGAATTACTCGTTCCGGATGATGACGTGGCAGACCTAGAGTGGGTTTCTCACTTTGTAGATGACTCTCTTCCTGAGCTTTCACTTCTCTACCCAGTTCAAATTCAAAGCAACGCTTGTCCTCAACATGAAACCAAGCATGTCAAAATTACACGTTTACCCTCTGAAAATGTTAAAATTATCACTAAAACCAGAACCGCCAAGAATAGAAAACCCAATCCTCATGTTTGGACTTTTAGCCCATTGCTTTTACGTCCGTTCTTCACGTCGCCGCCTTTGGTATCCGGAGAGCCACCAGCGAAGAAGCAGAAGAAAAAGGCTGAGGCCCAAGCTGTTGTGGGTGAAGCCCAAGACCAGGCCCAGTTACAGCGACGGTGTAGTCATTGTCAGGTGGACAAGACGCCGCAGTGGAGAACCGGCCCGTTGGGCGCAAAAACACTTTGTAACGCGTGTGGGGTTCGGTATAAATCCGGTCGACTTTTTTCGGAGTATAGACCGGCTTGTAGTCCCACCTTCAGCAGTAAAGTTCACTCGAATAGCCACCGCAAAGTGTTGGAGATAAGGAGGAGGAAAGGGATGGTTGGACCGGAAACCGGTTTATCGGCTCAGACTCAAATGGTTACGACTTGTTGA 1044 0.4598 MPIIVKPHHVTKCHTHAGSPFYKATRFELHNIVSPSILLLHRKMEFAVAKALKPSLRREFVFQQTLGEEVFCLNTNTVVTGEDFSVDDLLDFSNNDTLHHEHHNDDEEKDSLSLSSHSLSDDSNSNSTDASYDSIFSTELLVPDDDVADLEWVSHFVDDSLPELSLLYPVQIQSNACPQHETKHVKITRLPSENVKIITKTRTAKNRKPNPHVWTFSPLLLRPFFTSPPLVSGEPPAKKQKKKAEAQAVVGEAQDQAQLQRRCSHCQVDKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFSSKVHSNSHRKVLEIRRRKGMVGPETGLSAQTQMVTTC 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03413 347 PANTHER GATA TRANSCRIPTION FACTOR 44 347 - -
Car05g03413 347 ProSiteProfiles GATA-type zinc finger domain profile. 257 293 IPR000679 GO:0006355|GO:0043565
Car05g03413 347 PANTHER GATA TRANSCRIPTION FACTOR 44 347 - -
Car05g03413 347 MobiDBLite consensus disorder prediction 99 128 - -
Car05g03413 347 SMART GATA_3 257 311 IPR000679 GO:0006355|GO:0043565
Car05g03413 347 Pfam GATA zinc finger 263 296 IPR000679 GO:0006355|GO:0043565
Car05g03413 347 Gene3D - 253 329 IPR013088 GO:0006355|GO:0008270
Car05g03413 347 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 256 319 - -
Car05g03413 347 ProSitePatterns GATA-type zinc finger domain. 263 288 IPR000679 GO:0006355|GO:0043565
Car05g03413 347 MobiDBLite consensus disorder prediction 99 115 - -
Car05g03413 347 CDD ZnF_GATA 262 310 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03413 Car-Chr5 78652330 78653808 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03413 51 342 C2C2-Gata Transcription Factor Family AT5G66320 40.060 2.14e-54 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Car05g03413 GATA 4.7e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03413 - - gmx:100808242 325.865