Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03385 ATGAACTTGCAACAACAACAACATCACCAAAGTTACtcttcttcttcttcttcACTTAATCACTCACCATCTGGATTCATTAACCACTTTCATATGCCAATTGTAGCTGCTCCTGGAATTGATGTCAATTCTGCAATTTCAAGAACTTTCAGTTGTCCACCTGTTCTAGTAGACCCCAAACTCAATCACTCTCCTTCACTTGGGAAAGATAATTGTTCTAACAAGAGGAAACCTGAAAAGGCACATAATCCTAAGCTCAAGATTGTTGATGAAAATGACAACAAAGACAAAAAAAGGATCAAAGTTGGTGTTGAGGACGGTGAATCAAAAATAACGAGGCAAGCCAGCGGCAAATTAAAGAACACAAATAACAAAAAAGAAAAGTGTGATACTTCAAATTCAAAAGCTTCTGAGGTTCAAAATGAAAAACCTGATTACATTCATGTTCGAGCACGTCGTGGACAAGCCACCGATAGCCATAGCTTAGCAGAAAGAGTTAGAAGGGAAAAGATTAGCGAGAGAATGAAGTATTTACAAGATTTAGTACCTGGATGCAATAAAATTACAGGAAAAGCTGGAATGCTTGATGAAATCATCAACTATGTTCAGTCTCTTCAACGACAAGTTGAGTTCTTGTCAATGAAATTAGCTACTGTCAATCCAAGGCATGACTTCAATATTGATGATCTCTTTGAAAAAGAGGTGTTTCCTAATTGTGATGCAAATGCAACTTTTTCAGCTATGGGAATATCATCAGAATTGAATAGCATTAATCCTTATGTTCAGTTCAATTCACCACAGCAATTTGTTTCTTATGGTGGATTAGATAATACTGGGATGAACCCTTCAGATATGGGACTTAGAAGGACCATAAGTGCCCCTGTATCTTTACCTGAAACTTTTATTGATTCTTCTTGTTTTTCCCAAATTCTACCTTCCACAACATGGGAAGGTGATTTCCAAAACCTTTACAACAACTTGAGTTTTGATCAAGCAAGAGCAACATCATTTTCTTCTCAATCTCAGTTATTCACAGGTCTAGGTGAAGCTAGCAATTTAAAGATGGAGATGTAG 1074 0.3622 MNLQQQQHHQSYSSSSSSLNHSPSGFINHFHMPIVAAPGIDVNSAISRTFSCPPVLVDPKLNHSPSLGKDNCSNKRKPEKAHNPKLKIVDENDNKDKKRIKVGVEDGESKITRQASGKLKNTNNKKEKCDTSNSKASEVQNEKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLATVNPRHDFNIDDLFEKEVFPNCDANATFSAMGISSELNSINPYVQFNSPQQFVSYGGLDNTGMNPSDMGLRRTISAPVSLPETFIDSSCFSQILPSTTWEGDFQNLYNNLSFDQARATSFSSQSQLFTGLGEASNLKMEM 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03385 357 MobiDBLite consensus disorder prediction 58 143 - -
Car05g03385 357 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 37 335 - -
Car05g03385 357 MobiDBLite consensus disorder prediction 1 20 - -
Car05g03385 357 MobiDBLite consensus disorder prediction 70 113 - -
Car05g03385 357 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 155 205 IPR011598 GO:0046983
Car05g03385 357 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 153 224 IPR036638 GO:0046983
Car05g03385 357 Gene3D - 152 224 IPR036638 GO:0046983
Car05g03385 357 SMART finulus 161 211 IPR011598 GO:0046983
Car05g03385 357 Pfam Helix-loop-helix DNA-binding domain 159 206 IPR011598 GO:0046983
Car05g03385 357 CDD bHLH_AtBPE_like 145 230 - -
Car05g03385 357 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 37 335 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03385 Car-Chr5 78452708 78455155 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03385 94 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 49.798 1.06e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car05g03385 HLH 1.9e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03385 - - gmx:100798855 410.223