Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03384 ATGGCCTCAAATTCCTTAAGCAAACACAAACTTTGTGATTCAACTTGGACTCCTAAACAGAACAAGTTGTTTGAAAAGGCACTTGCAAAATATGACAAGGATACACCTGACCGTTGGATTAATGTAGCAAAAGCAGTTGGTGAAAAATCAGTTGAGGAAGTTAAGAGACATTATGAGATACTCTTGGAGGATCTCAAACACATTGAGTCTGGTCGTGTTCCAATTCCAAACTATAAGTCCACGTGA 246 0.3862 MASNSLSKHKLCDSTWTPKQNKLFEKALAKYDKDTPDRWINVAKAVGEKSVEEVKRHYEILLEDLKHIESGRVPIPNYKST 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03384 81 CDD SANT 15 62 IPR001005 -
Car05g03384 81 PANTHER PROTEIN RADIALIS-LIKE 3 1 80 - -
Car05g03384 81 SMART sant 12 64 IPR001005 -
Car05g03384 81 Gene3D - 12 75 - -
Car05g03384 81 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 80 IPR044636 GO:0003700
Car05g03384 81 ProSiteProfiles SANT domain profile. 11 66 IPR017884 -
Car05g03384 81 SUPERFAMILY Homeodomain-like 14 70 IPR009057 -
Car05g03384 81 Pfam Myb-like DNA-binding domain 15 58 IPR001005 -
Car05g03384 81 ProSiteProfiles Myb-like domain profile. 8 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03384 Car-Chr5 78439533 78440260 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Car05g03384 Myb_DNA-binding 9.7e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03384 - - gmx:100798314 143.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03384 05 78439533 78440260 Car05g03384 05 78439533 78440260 ECH