Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03382 ATGGCAGAAGTTGAGTACAGATGCTTTGTTGGTGGGCTTGCATGGGCCACCGACAGCGATGCTCTCGGGAAAGCCTTTTCACAATTCGGAGAAATCGTCGAATCGAAGGTTATCAGTGATCGTGAAACTGGAAGATCAAGAGGATTTGGATTTGTGACGTTCGCAACGGAACAGTCCATGAGAGAAGCGATCGAAGGAATGAACGGAATGGATCTTGATGGCCGTAACATTACTGTGAACGAGGCTCAGAATCGCggtagtggcggtggaggaggtggaggttataatcgtggcggtggaggaggtggatacggaagtggtggaggtggatatggaggtggtggtggtgggggttataaccgtggtggaggaggaggaggatatggtggccgtcgtgaaggaggtggtggcggttatggtggtggaggcggatacggtagtggtggaggaggaggtggttatggaggtggacgtgaccgtggttatggaggaggcggagacggtggtTCCCGCTACTCAAGAGGAGGCGGCGGCGGCGGTGGATCTGATGGAGGAAACTGGAGGAATTAA 570 0.2807 MAEVEYRCFVGGLAWATDSDALGKAFSQFGEIVESKVISDRETGRSRGFGFVTFATEQSMREAIEGMNGMDLDGRNITVNEAQNRGSGGGGGGGYNRGGGGGGYGSGGGGYGGGGGGGYNRGGGGGGYGGRREGGGGGYGGGGGYGSGGGGGGYGGGRDRGYGGGGDGGSRYSRGGGGGGGSDGGNWRN 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03382 189 SMART rrm1_1 7 80 IPR000504 GO:0003723
Car05g03382 189 Gene3D - 2 113 IPR012677 -
Car05g03382 189 SUPERFAMILY RNA-binding domain, RBD 6 116 IPR035979 GO:0003676
Car05g03382 189 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 2 131 - -
Car05g03382 189 MobiDBLite consensus disorder prediction 148 189 - -
Car05g03382 189 PANTHER GEO13361P1-RELATED 2 131 - -
Car05g03382 189 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 77 IPR000504 GO:0003723
Car05g03382 189 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 84 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03382 Car-Chr5 78435077 78435955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03382 8 86 Eukaryotic Initiation Factors Gene Family AT4G34110 36.709 2.68e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03382 - K13195 gmx:100777821 152.14