Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03365 ATGGAGGGTGGTGAGAGAACCGAGAATGATAATTCCGATATGGATCTTGTTCATCCAACTTTGCAACACCAACATTCAGATAATAATATTAATAATGGTCAAAATGCTGGTGGTGTGGATCAAGTAATGGTTGATCAGGGTGACGATGATACAACAAATACCAATTCTACTCGTTTAATCAGTGGAAACCAGCATCAACTTGAAGAACTTGTCACCCCAAAGCTGAAAGAAAAGAACGTCAAAGAAATGAATCATGTGCTAAACAGTGCCGAGATGACTTCTTATGACGAGTCTGGTACGCCTGCGGATCGAGAAGCATTTATGAAAGAGCTTGAGAATTTCTACAGAGAGAGGTCCCTGGAATTTAAGCCTCCAAAATTCTATGGAGTGCCATTGAATTGTCTCAAGTTATGGAGAGCTGTTATCAGACTAGGCGGCTACGAAGTGGTAACTGCATCAAAGTTGTGGCGGCAAGTAGGAGAGTCTTTCCACCCTCCTAAGACATGCACTACAGTCTCATGGACATTTAGAATATTTTATGAGAAGGCACTTTTAGAGTATGAAAAGTATAAGAGAGAGATCGGGGAGCTACAGCTTCCTGTTGGATCACTCCATCAACCTTCTAGTGTGGAAAAAGAGACTGCTGTTTATCAGGCTCCAGGCTCAGGTAGGGCGAGAAGGGATGCGGCAGCACGTGCAATGCAAGGTTGGCATGCTCAGCGCCTTCTGGGATATGGTGAGGCTGCTGAGCCGACTGTTAAGGACAAGAACTTCAGTTCCACACCAAAACGTGAAAAGAACTTAAAAAATATCGGTGTGATTAACAAACAAAGGACACCATCCAGTATGGACCATGCCGACAAAGCTGCAAATATAGAAGGAGACAGACAATTGATCGCAGCGGTAGTGGACCTTGGACCTCCAGCGGACTGGGTGAAGATCAATGTGCGGGAAACGAAGGATTGTTTTGAAGTGTATGCACTAGTTCCTGGGCTCCTTCGTGAGGAGGTTCGAGTCCAATCCGATCCAGTTGGACGACTTGTTATAACTGGTCTGCCAGAACACGTCGACAATCCATGGGGTATTACCCCCTTCAAAAAGGTTGTGAACTTACCTGCAAGAATTGATCCGCTTCAGACATTTGCTGTTGTTAGTTTGCATGGTCGACTATTTGTACGCGTTCCTTTCGAGCAGGGAGCTGTGTGA 1206 0.4502 MEGGERTENDNSDMDLVHPTLQHQHSDNNINNGQNAGGVDQVMVDQGDDDTTNTNSTRLISGNQHQLEELVTPKLKEKNVKEMNHVLNSAEMTSYDESGTPADREAFMKELENFYRERSLEFKPPKFYGVPLNCLKLWRAVIRLGGYEVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKYKREIGELQLPVGSLHQPSSVEKETAVYQAPGSGRARRDAAARAMQGWHAQRLLGYGEAAEPTVKDKNFSSTPKREKNLKNIGVINKQRTPSSMDHADKAANIEGDRQLIAAVVDLGPPADWVKINVRETKDCFEVYALVPGLLREEVRVQSDPVGRLVITGLPEHVDNPWGITPFKKVVNLPARIDPLQTFAVVSLHGRLFVRVPFEQGAV 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03365 401 ProSiteProfiles ARID domain profile. 101 192 IPR001606 GO:0003677
Car05g03365 401 SMART ARID_2 98 188 - -
Car05g03365 401 Gene3D - 101 199 IPR036431 GO:0003677
Car05g03365 401 SUPERFAMILY HSP20-like chaperones 309 396 IPR008978 -
Car05g03365 401 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 23 398 IPR045147 GO:0006357
Car05g03365 401 SUPERFAMILY ARID-like 92 198 IPR036431 GO:0003677
Car05g03365 401 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 300 401 IPR002068 -
Car05g03365 401 Pfam ARID/BRIGHT DNA binding domain 104 188 IPR001606 GO:0003677
Car05g03365 401 SMART bright_3 102 193 IPR001606 GO:0003677
Car05g03365 401 CDD ARID 103 188 - -
Car05g03365 401 CDD ACD_sHsps_p23-like 316 395 - -
Car05g03365 401 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 5 23 398 - -
Car05g03365 401 Gene3D - 303 400 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03365 Car-Chr5 78272592 78279790 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03365 11 398 ARID Transcription Factor Family AT1G76510 63.409 1.58e-160 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Car05g03365 ARID 6.5e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03365 - - gmx:100797486 615.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03365 05 78272592 78279790 Car05g03365 05 78272592 78279790 ECH