Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03364 ATGAGTGAGAGAAAAGAGAACTCATCCTCTGTCGTGAGTCGGCGACCTCGAGGGCGTCCACTTGGGTCTAAGAACAAGTCTAAGGCAGGTATGAATATGATAGTGAAATATGAAAGCCCTTATGCACTTCATTCTCGTGTTATCGAGATCGCTGCTGGATCAGATGTTTTAGAGACTATCTTCAACTATGCTCAACGTCCACCTCAAGGCATCTGCATCCTTGCTGGTGATGGTAAGGTGTCTCATGTTACTCTTCGTCAATCTAATGGGACTATTTTACCCCTCCAGGGTACCTTCCAGATTATTTCCATATCTGGTACTATTCTTCCTCCTTCTATGCCACAGGCTCCTACAGGTTTGTCTGTTTACTTGTCAAGCACCACAGGACAAGTTGTTGGGGGTAGTGTTGTTCCTCCTCTTCTCGCTTCAACTCCTCTGCTTTTGATGGCAGCTTGTTTTGCAGATGCTGAACTTGTTAAGTTACCTTTCCTGCCATCTCATCACCACCCTCCCTCAGCTTCTGCTCATTTGCTCGATGTTATTCCAATCAGGAACACCGATCTCAACTCTCCTTCATCCCCTATCcaacctgcaactgctactgcaactgcaactgcTGATTCACCACCCAAACCTCCTCGCATTTAG 648 0.4383 MSERKENSSSVVSRRPRGRPLGSKNKSKAGMNMIVKYESPYALHSRVIEIAAGSDVLETIFNYAQRPPQGICILAGDGKVSHVTLRQSNGTILPLQGTFQIISISGTILPPSMPQAPTGLSVYLSSTTGQVVGGSVVPPLLASTPLLLMAACFADAELVKLPFLPSHHHPPSASAHLLDVIPIRNTDLNSPSSPIQPATATATATADSPPKPPRI 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03364 215 MobiDBLite consensus disorder prediction 188 206 - -
Car05g03364 215 Gene3D - 45 163 - -
Car05g03364 215 ProSiteProfiles PPC domain profile profile. 38 175 IPR005175 -
Car05g03364 215 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 29 8 165 - -
Car05g03364 215 SUPERFAMILY AF0104/ALDC/Ptd012-like 43 162 - -
Car05g03364 215 CDD DUF296 46 144 IPR005175 -
Car05g03364 215 MobiDBLite consensus disorder prediction 1 27 - -
Car05g03364 215 Pfam Plants and Prokaryotes Conserved (PCC) domain 47 153 IPR005175 -
Car05g03364 215 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 8 165 IPR014476 GO:0003680
Car05g03364 215 MobiDBLite consensus disorder prediction 188 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03364 Car-Chr5 78267845 78268618 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03364 10 156 AT-hook Motif Nuclear Localized (AHL) Family AT3G60870 48.980 2.47e-40 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03364 - - cam:101492608 182.57