Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03362 ATGGCATACCAATCGATTCAGGGTCCGAGTTCAGGATCAAGTTCAAGTTCAGGGTTTCAATTGTTGAACTCTCCTTTTGGAGATACAACTTACACAAAAGTCTTCGTTGGAGGATTGGCATGGGAAACTCAAAGCGAAACCATGCGCCGTTACTTTGAACAGTTTGGTGATATTCTTGAAGCCGTTGTTATCACCGATAAGAACACTGGTCGATCCAAAGGCTACGGTTTTGTGACTTTCCGTGATCCAGAAGCTGCTAGGAGAGCCTGTGCCGATCCAAGTCCTGTTATTGATGGTAGAAGGGCTAATTGTAACTTGGCTTCACTTGGCCGTCCACGACCACCTTTGCCATATGGACGGGTAAGACCAGCATCCCCTTATGTTGGAAGTTTGCAACCAGCCCGTGGTGCTTATGTTGGAGGTTATGGCTACCAGCAGCAACCACTTTCCTATGGCTACCAACAAGGAGTGGTTTATCCTCCTTATGGGTATACGACATATGGACCTGAATACGTCTACCCACAGAGTATGTACAATCCTTATGTGGGTCAACAGTACCTTCAGATATATGGCGTTCCTGGTGCGGCAAATACAACTATTTATCCTTATGGACAGTTGGGTCAAGCTATTCCTGGTGGTCATGGCTATACAGCAATGCAGGGTTATACAGTACCAGGCCATCAGTTTGTGCCCTATGGTGGCTCCAATGTGAATGCAATAACAACTTCACCTATGCCTGCCATTCAAGCCACATATGCTAGCGGAATTGCTGCACCTGTTCCAGGCCAACCTCAATTTATTGTTTCTCCTCAGTTTATGCAAGGTAGCGGTCCTGACCAAACAGCTGGCCTTGCAAGTTATTTATTTTGCATTCTAGAGGTCATATATAGTCATGCTCACCAAGTTGTGTCTGAGTCGCTCCAGATGGCGAAGGAAAATGGGACGTGCAGGCTACTTCTTCCATTTGGACGTTTACACTACTGTATTTATACCTAA 996 0.4588 MAYQSIQGPSSGSSSSSGFQLLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPSPVIDGRRANCNLASLGRPRPPLPYGRVRPASPYVGSLQPARGAYVGGYGYQQQPLSYGYQQGVVYPPYGYTTYGPEYVYPQSMYNPYVGQQYLQIYGVPGAANTTIYPYGQLGQAIPGGHGYTAMQGYTVPGHQFVPYGGSNVNAITTSPMPAIQATYASGIAAPVPGQPQFIVSPQFMQGSGPDQTAGLASYLFCILEVIYSHAHQVVSESLQMAKENGTCRLLLPFGRLHYCIYT 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03362 331 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 90 IPR000504 GO:0003723
Car05g03362 331 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 109 IPR000504 GO:0003723
Car05g03362 331 PANTHER BOULE-RELATED 1 280 IPR037366 GO:0003729
Car05g03362 331 SUPERFAMILY RNA-binding domain, RBD 31 142 IPR035979 GO:0003676
Car05g03362 331 Gene3D - 4 117 IPR012677 -
Car05g03362 331 PANTHER RNA-BINDING PROTEIN 38-LIKE ISOFORM X1 1 280 - -
Car05g03362 331 CDD RRM_RBM24_RBM38_like 32 107 - -
Car05g03362 331 SMART rrm1_1 33 105 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03362 Car-Chr5 78242445 78246279 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03362 21 187 C2H2 Transcription Factor Family AT2G19380 32.022 3.47e-17 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03362 - - aprc:113864528 498.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03362 05 78242445 78246279 Car05g03362 05 78242445 78246279 ECH