Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03358 ATGAGGAGTTATGGATTAGAGAGCAAGGATGAATTTCCTCGAGAGGGTTCAGTAGTGTTGGCCTTACCAACCCCATCACCTCCTCCTTTGGCTTCTGCCTCAATTGGTACCTCCAAGAAGAGTAGAGGCAGGCCTCGTGGTTCTCACAACAAGAATCACTCTAGGAAAATACCTTCTGGATTACCGAGACCTACACTTACGTCCCACATCATCATGGTCAACCCGGGAGAGGAGTTGTACGAAAAACTAAGGGCATTTTCTCAAGATATTGCAAAGAGTGTTAGCATCGTAACAGCAAATGGTGTTGTCTCAAAAGTGAGAATATCTTCACATCCATCTTCAGATGAAACTATAACTTATGAGGGTCGATATGAAATAATATCACTCTCTGGTTCTTTCATTTTTTATGAAAATGAAAGTCAGAGAAACATAAATAGTGGGTTAAACGTGACATTGTCATCATTTTCCGATGGTCGTGTATTTGGTGGTCGAGTTGCTGGTGTTTTAATAGCTGCTACCTCTCTTCAGATAGTATTGGGGAGCTTCTCTTCAGAGGGTCTAGAGGAAGTGGATTTTACAAACCAGAAGGAAAACGAGTCTGGCCCAAAAGAGGTTCCTACAGAAGCCCCAAAGGATCTCATCATCAAAGGGTAG 654 0.4266 MRSYGLESKDEFPREGSVVLALPTPSPPPLASASIGTSKKSRGRPRGSHNKNHSRKIPSGLPRPTLTSHIIMVNPGEELYEKLRAFSQDIAKSVSIVTANGVVSKVRISSHPSSDETITYEGRYEIISLSGSFIFYENESQRNINSGLNVTLSSFSDGRVFGGRVAGVLIAATSLQIVLGSFSSEGLEEVDFTNQKENESGPKEVPTEAPKDLIIKG 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03358 217 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 10 14 201 - -
Car05g03358 217 ProSiteProfiles PPC domain profile profile. 62 208 IPR005175 -
Car05g03358 217 SUPERFAMILY AF0104/ALDC/Ptd012-like 66 188 - -
Car05g03358 217 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 14 201 IPR039605 GO:0003680
Car05g03358 217 CDD DUF296 67 182 IPR005175 -
Car05g03358 217 MobiDBLite consensus disorder prediction 193 217 - -
Car05g03358 217 Pfam Plants and Prokaryotes Conserved (PCC) domain 68 183 IPR005175 -
Car05g03358 217 Gene3D - 67 209 - -
Car05g03358 217 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03358 Car-Chr5 78225181 78228881 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03358 39 189 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 44.371 5.24e-32 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03358 - - cam:101507512 406.371