Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03356 ATGTTAGCAATGGAAGAAGTACTTTGTGAACTTAGTGATCATGAAAACAAAAGAGAGCAGCAAGGTCTCCCACCAGGTTTCAGATTTCATCCCACTGATGAAGAACTAATAACATTTTATTTAGCTTCAAAGGTTTTCAATCCAACAAATTTCAGTAGCATTGTGAAGTTTGCAGAAGTTGATTTGAATAGATGTGAGCCATGGGAACTTCCAGAAGTGGCAAAGATGGGTGAAAGAGAGTGGTATTTGTTCAGTTTGAGAGATAGAAAATACCCAACTGGACTTAGAACTAACAGAGCCACTGGTGCTGGTTACTGGAAAGCAACCGGCAAAGATAAGGAGGTTTACGCTGCTGCTGCTTGCACTGGATCCTTGCTCGGCATGAAGAAAACACTTGTTTTCTACAAAGGTAGGGCCCCACGCGGTGAAAAGACCAAATGGGTCATGCATGAGTACCGTTTGGGACCTCACTATTCTCACATTCACACTTGCAAGGAAGAGTGGGTGATATGCAGAATATTTCACAAATCTGTTGAAAAAAGAAATTCAATAATCCAAGTTGAAGGTGGTTCTTCTAATATATCCCTAAAAAAAGGGTCTTTATTACCTCCTCCACCTTTACTTCCAAACCCAACTTCATTTTCATTGCAAAATGACCAACTCACCCATTCTCATTTTCCATTGCATGCATTCCAAACTTCCTTCCCAATCACTCATGATATGTCACAACAAAATTTCACCCTGCAGAAAGAACCCAATATTCCAAAAACAGAGGCTACATTCTATGAATTATACCAATCACAATCAATAGATGATGTTGTTAACTTGAGATGGATTGACCATATTAATAATTTTCAAAGTTCATTCCCTCTTGAGATGAATGATGATGATGAGTTGATTGCATTCTCATCAGGAGCTGATTCAAATGCTGAATTTAGGGACATGTCAACTTCAACACCCTTTAATAGTAGACTAGCCTTAGATGCTTCTGTTGGAATAGATTCTTGGTCACAGCCCCAACTTGTCTAG 1029 0.3916 MLAMEEVLCELSDHENKREQQGLPPGFRFHPTDEELITFYLASKVFNPTNFSSIVKFAEVDLNRCEPWELPEVAKMGEREWYLFSLRDRKYPTGLRTNRATGAGYWKATGKDKEVYAAAACTGSLLGMKKTLVFYKGRAPRGEKTKWVMHEYRLGPHYSHIHTCKEEWVICRIFHKSVEKRNSIIQVEGGSSNISLKKGSLLPPPPLLPNPTSFSLQNDQLTHSHFPLHAFQTSFPITHDMSQQNFTLQKEPNIPKTEATFYELYQSQSIDDVVNLRWIDHINNFQSSFPLEMNDDDELIAFSSGADSNAEFRDMSTSTPFNSRLALDASVGIDSWSQPQLV 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03356 342 Gene3D NAC domain 32 180 IPR036093 GO:0003677|GO:0006355
Car05g03356 342 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 254 - -
Car05g03356 342 SUPERFAMILY NAC domain 18 176 IPR036093 GO:0003677|GO:0006355
Car05g03356 342 ProSiteProfiles NAC domain profile. 23 176 IPR003441 GO:0003677|GO:0006355
Car05g03356 342 PANTHER PROTEIN CUP-SHAPED COTYLEDON 3 12 254 - -
Car05g03356 342 Pfam No apical meristem (NAM) protein 24 154 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03356 Car-Chr5 78214274 78216691 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03356 1 182 NAC Transcription Factor Family AT1G76420 73.077 1.58e-93 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Car05g03356 NAM 8.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03356 - - mtr:MTR_3g116070 372.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03356 05 78214274 78216691 Car05g03356 05 78214274 78216691 ECH