Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03353 ATGACTCGTCCCTTCAGATATCTCGGCGAGCTCAACTCGTCTTCCTCCGACTCATCTGATTCCTCCGTCGTTGATTCCGACTTCGTCGTTATCCTCGCCGCTCTCCTCTGCGCACTCATCTGCGTTCTAGGTCTCGTCGCCGTCGCACGTTGCGGTTGTCTTCGTCGCTTACGTATCTCCTCCACCACCCTCACGTCTACAACTACACCTCCTGCTGCAGCTAACAAAGGCGTCAAGAAGAAGGTTTTGCGCTCTCTTCCGAAACACACAGCGACAGCCGAATCTGCTGTTAAATTCTCCGATTGCGCGATCTGTCTGAGCGAATTCACCGCCGGAGATGAAATCCGAGTGTTGCCTCAGTGCGGTCATGGATTCCACGTGTCTTGTATCGACGCGTGGCTCAGATCTCATTCTTCGTGTCCGTCTTGCCGTCAGATTCTGGTAGTTTCTAGATGCGACAAATGCGGTGGAATCCCCGTCgctactgctactgctactaataccgctgcctgctCTAGCTCCGCGCCGGCGCTGGTGCCGGAGCCTGAGACTAGATTAAAGGTAAGGGAGGACGACGGCAATAGATTCTTGCCTTAA 597 0.5109 MTRPFRYLGELNSSSSDSSDSSVVDSDFVVILAALLCALICVLGLVAVARCGCLRRLRISSTTLTSTTTPPAAANKGVKKKVLRSLPKHTATAESAVKFSDCAICLSEFTAGDEIRVLPQCGHGFHVSCIDAWLRSHSSCPSCRQILVVSRCDKCGGIPVATATATNTAACSSSAPALVPEPETRLKVREDDGNRFLP 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03353 198 SMART ring_2 102 143 IPR001841 -
Car05g03353 198 PANTHER RING-H2 FINGER PROTEIN ATL8 1 186 - -
Car05g03353 198 Pfam Ring finger domain 101 144 IPR001841 -
Car05g03353 198 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 186 - -
Car05g03353 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 148 IPR013083 -
Car05g03353 198 SUPERFAMILY RING/U-box 84 149 - -
Car05g03353 198 CDD RING-H2_PA-TM-RING 101 144 - -
Car05g03353 198 ProSiteProfiles Zinc finger RING-type profile. 102 144 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03353 Car-Chr5 78186853 78187896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03353 5 198 C3H Transcription Factor Family AT1G20823 57.921 8.29e-67 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03353 - - gmx:100794614 252.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03353 05 78186853 78187896 Car05g03353 05 78186853 78187896 ECH