Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03346 ATGATTAGAGGGGGGTGTAGCTTCGAAGAAAAGGTTAGAATGACACAAAATGCGGGCTACACAGCTGTAATTGTCTATGACAATGAAGATGGTGGCGTCCTGGTTGCAATGGCAGGAAATTCTGCTGGTATAAGAATACATGTTGTATTTGTATCAAAAGCTTCGGGTTTGACTCTAGAAAGATCACAATTTGATGCTAATCATTATGACACTAAGATGAATGAACTGCTTGCCAGTGATGGGCAAGAATTCTTCGCCTCATATGATGAAGTCCATGATAGCTTTGATGCAATGGGGCTGCAAGAAAATCCTCTGCGAGGCATATATGCTTACGGTTTTGAGAGGCCTTCTGCAATCCAGCAAAGAGGAATTGTTCCTTTCTGCAAAGGTCTGGATGTGATTCAACAGGCTCAATCAGGAACTGGGAAGACAACAACATTTTGTTTTGGAATTTTGCAGTAG 462 0.4177 MIRGGCSFEEKVRMTQNAGYTAVIVYDNEDGGVLVAMAGNSAGIRIHVVFVSKASGLTLERSQFDANHYDTKMNELLASDGQEFFASYDEVHDSFDAMGLQENPLRGIYAYGFERPSAIQQRGIVPFCKGLDVIQQAQSGTGKTTTFCFGILQ 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03346 153 Pfam PA domain 6 59 IPR003137 -
Car05g03346 153 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 93 121 IPR014014 GO:0003724
Car05g03346 153 Gene3D - 83 153 IPR027417 -
Car05g03346 153 PANTHER - 58 153 - -
Car05g03346 153 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 153 IPR027417 -
Car05g03346 153 Gene3D - 1 74 - -
Car05g03346 153 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 58 153 - -
Car05g03346 153 SUPERFAMILY PA domain 2 51 IPR046450 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03346 Car-Chr5 78151315 78151776 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03346 55 153 Eukaryotic Initiation Factors Gene Family AT3G13920 76.000 3.95e-47 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03346 K03257 - cam:105852033 206.838