Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03342 ATGAATTTATTTTTGTTTCCTTACTTTTATTTTTACTGTGTGTTGGTGTTGGTGTTGGGAGAAGGAAGAGGAGTTTattcaaattcaaattcaaattcaaattcaaatGTCTCATTTTCAAGACCCACCTTTGTAAACATTGGAGCTATCTTCACCTTTGATTCCTCCATTGGTAAAGTTGCGAAGCTTGCTATGGAAGAAGCTGTCAAAGATATCAACTCCAATTCCAACATTCTTCATGGAACTCAACTTCGTCTCCATATGCAAACTTCCAATTGTAGTGGTTTTGATGGCATGATTCAAGCTTTGCGGTTCATGGAGACCGATGTAATTGCCATACTAGGTCCACAATCTTCTGTAGTTTCCCACATAGTATCTCATGTTGCAAACGAGCTTCGTGTTCCTATGCTGTCATTTGCAGCTACAGACCCTACACTCTCATCGCTGCAGTTCCCTTTCTTTGTCAGGACAACACTCAGTGATTTGTACCAAATGACTGCTGTTGCTGAAATCATTGATTTTTATGGATGGAAGGAAGTTATTGCTATTTATGTAGATGATGATTATGGACGAAACGGTGTGTCTGTGTTAGAAGATGCGCTCGCAGGAAGGCGTTGTAGAATCTCCTACAAGGCAGGGATCAAATCAGGACCTGATGTTGATAGGGGTGAAATCACCAATTTGCTTGTGAATGTGGCGCAGATGCAGTCTCGAGTTATTGTTGTCCATGCACATTCTAATTCTGGATTTATGATCTTCAAAGTGGCGCGTTATCTTGGGATGATGCAGGAGGGTTATGTCTGGATAGCCACAGATTGGCTTTCCACTGTTTTAGATTCTTCTTCTCTTCCTTTGGAGACAATGGATACTCTGCAGGGAGCACTTGGTTTGCGGCAGCATACGCCTGATACTGATAAGAAAAAAGCATTTTTCACCAGGTGGAACAAGATAACTGGTGGTTCCTTAGGGTTACATTCTTATGGTCTCCATGCTTATGATTCCGTTTGGCTGGTTGCACGAGCTATCGATGAGTTTTTCAATCAGGGCGGGGTCATTTCGTGTACCAATTACACAAGTTTGCATGATAAGGGAAAGGGTGGTGGTCTTAACCTTGATGCAATGAGCATATTTGACAACGGAACGCTTCTATTGGACAACATATTGCAGAGTGATTTTGTTGGATTATCAGGTCCAATGAAATTTGATTTGGATAAAAATCTTTTTCGACCAGCCTATGACATCATTAATGTTGTTGGAAATGGTTTTCGTCGAATTGGCTACTGGTCTAACTATTCTGGGTTGTCAATTGTATCTCCTGAGACACTGTATGCTAACCCACCTAATAGATCAAGTGCAAACCAGCACCTTCACAGTGTGATATGGCCTGGAGAAACACCATCCAGGCCCCGTGGATGGGTCTTCCCCAACAATGGAAAACAATTGAGAATTGGTGTGCCTATCCGAGTCAGTTTCCATGAATTTGTATCACCTGTAAAGGGAACTGATACGTTTAAAGGGTTCTGCGTTGATGTATTTGCAGCAGCTGTAAATTTGTTACCATATGCCGTTCCTTACCGATTTGTACCGTTTGGTGATGGTCGAAAAAATCCAAGCTACACAGAACTTGTCAACTCAATAACCACTGGTTATTTTGATGGTGCTGTTGGCGACATTGCCATTGTCACAAATCGGACAAGGATTGTAGATTTTACACAGCCGTATGCTGCATCTGGACTTGTTGTGGTGGCCCCTTTTAAGAAGATCAATTCAGGCGGTTGGTCTTTCCTGCAGCCATTCACTCCTTCCATGTGGATTGTGACTGCTTGTTTCTTCTTTTTCGTTGGGATAGTTGTATGGATTCTGGAACACAGGATAAATGATGAGTTCAGGGGTCCACCTAAACAACAATTTATAACCATATTATGGTTTAGTCTGTCTACTCTATTTTTTTCTCACAGAGAGAATACAGTGAGTGCTCTTGGTCGCGGTGTGGTGCTCATATGGTTGTTTGTGGTTTTGATCATTAATTCAAGCTACACTGCAAGTTTAACATCCATACTCACAGTGCAGCAGTTATCTTCACCTATCAGTGGCATTGATAGCTTGAAAGCTAGTGATGAACCTATAGGGTTCCAAGTGGGTTCGTTTGCGGAACGTTACTTGACTGAAGATATCGGAATATCCAAATCTAGACTTGTTGCACTTGGATCTCCAGAAGAATATGCTAAGGCACTTCAACTTGGTCCTAATAAAGGAGGTGTTGCTGCTATTATAGACGAACGGCCCTATGTCGAAATATTCTTATCAGCTCAATGCACATTCAGGATTGTAGGTCAGGAGTTCACCAGAAGTGGCTGGGGTTTTGTGAGTATCTCTACCTTTTAG 2385 0.4151 MNLFLFPYFYFYCVLVLVLGEGRGVYSNSNSNSNSNVSFSRPTFVNIGAIFTFDSSIGKVAKLAMEEAVKDINSNSNILHGTQLRLHMQTSNCSGFDGMIQALRFMETDVIAILGPQSSVVSHIVSHVANELRVPMLSFAATDPTLSSLQFPFFVRTTLSDLYQMTAVAEIIDFYGWKEVIAIYVDDDYGRNGVSVLEDALAGRRCRISYKAGIKSGPDVDRGEITNLLVNVAQMQSRVIVVHAHSNSGFMIFKVARYLGMMQEGYVWIATDWLSTVLDSSSLPLETMDTLQGALGLRQHTPDTDKKKAFFTRWNKITGGSLGLHSYGLHAYDSVWLVARAIDEFFNQGGVISCTNYTSLHDKGKGGGLNLDAMSIFDNGTLLLDNILQSDFVGLSGPMKFDLDKNLFRPAYDIINVVGNGFRRIGYWSNYSGLSIVSPETLYANPPNRSSANQHLHSVIWPGETPSRPRGWVFPNNGKQLRIGVPIRVSFHEFVSPVKGTDTFKGFCVDVFAAAVNLLPYAVPYRFVPFGDGRKNPSYTELVNSITTGYFDGAVGDIAIVTNRTRIVDFTQPYAASGLVVVAPFKKINSGGWSFLQPFTPSMWIVTACFFFFVGIVVWILEHRINDEFRGPPKQQFITILWFSLSTLFFSHRENTVSALGRGVVLIWLFVVLIINSSYTASLTSILTVQQLSSPISGIDSLKASDEPIGFQVGSFAERYLTEDIGISKSRLVALGSPEEYAKALQLGPNKGGVAAIIDERPYVEIFLSAQCTFRIVGQEFTRSGWGFVSISTF 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03342 794 PANTHER GLUTAMATE RECEPTOR 3.3 34 789 - -
Car05g03342 794 Gene3D - 591 718 - -
Car05g03342 794 CDD PBP1_GABAb_receptor_plant 46 437 IPR044440 -
Car05g03342 794 Gene3D - 63 409 - -
Car05g03342 794 Gene3D - 476 590 - -
Car05g03342 794 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 34 789 - -
Car05g03342 794 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 118 146 - -
Car05g03342 794 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 331 343 - -
Car05g03342 794 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 58 74 - -
Car05g03342 794 Pfam Receptor family ligand binding region 62 419 IPR001828 -
Car05g03342 794 PRINTS Metabotropic glutamate GPCR signature 164 180 IPR000337 GO:0004930|GO:0007186|GO:0016021
Car05g03342 794 PRINTS Metabotropic glutamate GPCR signature 180 197 IPR000337 GO:0004930|GO:0007186|GO:0016021
Car05g03342 794 PRINTS Metabotropic glutamate GPCR signature 113 139 IPR000337 GO:0004930|GO:0007186|GO:0016021
Car05g03342 794 PRINTS Metabotropic glutamate GPCR signature 145 164 IPR000337 GO:0004930|GO:0007186|GO:0016021
Car05g03342 794 Pfam Ligand-gated ion channel 602 706 IPR001320 GO:0015276|GO:0016020
Car05g03342 794 Pfam Bacterial extracellular solute-binding proteins, family 3 501 767 IPR001638 -
Car05g03342 794 PIRSF IGluLR_plant 4 790 IPR017103 -
Car05g03342 794 SUPERFAMILY Periplasmic binding protein-like II 457 789 - -
Car05g03342 794 SMART GluR_14 482 793 IPR001320 GO:0015276|GO:0016020
Car05g03342 794 SUPERFAMILY Periplasmic binding protein-like I 39 473 IPR028082 -
Car05g03342 794 Gene3D - 160 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03342 Car-Chr5 78124991 78130003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03342 40 788 Ion Channels AT1G42540 66.445 0.0 1069
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03342 K05387 - gmx:102661260 1254.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03342 05 78124991 78130003 Car05g03342 05 78124991 78130003 ECH