Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03332 ATGAATCAGAGGCAACCACAAACCAGAGGCAAACTGAACCATATGCAAACCGGAATCAGAGGCAACCAAGAACCAGAGGTAAAACATAACCACATGCAAAATGGAACCAGAGGCAAATCAGGAATTAGAGGTAACCACGAACTAGAGGCAAAACATAACCACATGCAAACCCCAGAGGCAACCAAAGGCAATGATTACACAGTGAAACCAACAACCCAGGAGCTCCTTGTCCGAGATTTGCATGATAATACTTGGACATTTAAACATACACATTGCGGTCGGCCAAAGAGACATGTTCTCAGTAGTGGATGGAACTTGTTTGTTAGGTCAAAAAGGCTTAAAGTAGGAGATACTGTCATTTTTATCAGACGTGCTAATCGTCAACAGGCATCATCTCCTGATAGTATGCACTCTGGTGTGCTTGCTGTTGTTGCTCAAGCTCTTGCTAATCGAAGCCCATGGACTGTTTACTACAATCCAAGAGTTTGTACTTCAGAATTTGTTATTCCACATGCTAAATACATAAAAGCAAAACATCTGTCTCAATTGTCAGTTGGCTTGAGATTTGGTATGATGTTTGAGACACAAGAATTTTGTAAGCACAGTGGAGTGGGACGAGCAGGATTNNNNNNNNNNNNNNNNNNNNNNNGTAGGGAAAAACCGAATAGAGTTAGTTCGTGGGACATCGATCTTTTAATCTCTGACATGACTTTCACTTTAAATCCTGAAAGGCTTCAATTATTGGACACTTGGTCCTGTCAGAGGAAGAATAAGCGCAAAGATAGCAGAGTAGTTGATGTAGAAGACGACCTCATTCAGATAAGGACGAATAAGCACCAAGAAGTTCTCTTCAAGAAGCTAAAGGAGGTTCATACTCGTTCGGATAATACCTCTTCTCCTATCATTTCTGATGCTGTTGATGCTACTGCTACCGCTCTACCTGTCATCAACACTACAAAAGACATTATTCCTGCAATGACACGAGCGTTATGCTCTAACGACCCTGCTGCACGATTGGAAGCAATTACTCAGTTTAGTAAGCTTTTATCAATGTGTATGAATGCAATTCATACATTAAATGTTTTGGCAATGGATGATATACCTCAACTACAGGCTATGGCAGCATCGGCTTTTGACACAAGAACTATAATGGAAGATGGTGTGGTTCCCCTGCTTGTGCAGCTTCTGAGCTCTAGTAGTGATGACCTCAAAGAAATGGCAGTATTGGCATTAAGTAACCTTGTTGGCGATTCCACGAGCACAAGGGATTGTGTTCTTAATCATGGCGCACTCTTGCCATTATTGTCTCTGTTGTCGAATCCATCTACAACAAAATTATCTATGTTGAAGAATGCTACATGGACTTTATTAAAATTGTGTCATGGAAAGCCTTCCCCTCCTCCCACACTTTTTGAACAGATACAACCTACATTGTCTATCTTTCGGGAACTCTTGTGGATGCCTGATGAAGAAGTTGTACAAAATGCATGTCTGACTCTCTCTTTCCTCGTTCGCGAGGGTTCAAGCAAAATGTTCCAAGCTATCAATGAAGCAAATATTTGTCCAAAACTTGTAGGGCTACTACTGTTTCCAAGGTCAAGAGTTATCGTGTATGTTCTGCAGACTCTAGGAGATATTGTTGCTGGTGATGAAGCTAGTACTCAGATTCTAATTAACAACGGAGTTCTTCCTTGTCTTAATAAAATACTTGTTACACAAAGTGACAAAATTATCCTCAAATTAGCGTGTCTGGTAATTTCAAATATCACAGCAGGGACAGAATCTCAAATACAGGATGTCATTGATTTTCATCTTGTCGGTCCTCTTGTTCGTCTTACGGAGGCTGAATTTCACATTAAGGAGGCTGTGTGGGCTATTGCCAATGGTACTGATGGAACTCGTGAGCAAATTCGATCCTTCGTGAGTGAAGGGTGCATCGAGGCACTCTATGATCTTTTGACCGATCCAGACCCTACAATTGTAACAGTTTGTTTAAAAGGCTTGAAAAACATCTTAAGTGCAGGAGAAATTAACGAGCAGCAGGGACTATATTGTGGGGTCAATATTTATGCTCAAATGGTGGATGAATGTGGAGGATTGGCAAATATTTTAATTTTGCATAGCGATGACAACAATGACATTTATGATAGAATTGCAGAGACTTTCATGAAATATTGGCCTTTGGAGCTTGAGAAAGATTATCATAATCTTCATAGTTGTGTGGCTGGTAGTGACCAAGATTTTTTTTTCGGGCTAAACCTCCTCTCAGATGTTGCACATTCTATCCATGAAAGCACACCTTCTCAGCCTCCTTCAAAGCCTTATGTGAAAGTATCACAAATGGATTTCTTGTTTCaatttcctgaccatattcaaccatatattaacaacatagttgacgtggaagcagatggaaattgtggatatcgagcgattgcagctttaattggtggaagcaaggacgattggcctctagttcgtgatgagttagataaggagcttgggttgcatctcgatctctatgaacgactttttcgtggacgactgcaagaattgaggtcctctttgcgtgtatgtggtaaagaatttgtaggcatgaataagtggatgtcaataccagacatgggatatgtaatagccacaacatataaattaatcctagtgtctttatcaaacactttgagtaggacattctttcctcttaggggttctccacccccaaatcaatctactcggcatgttatttgtattggatttgttgatggaaatcactgggtgcaggtatttttgaaggcagaatgtccattgccTATCATTGCTGATAAATGGGAAGAGTTTTGTTACCCAGAGGCTCGACCATGGCCGACCGCATATATCCCTCAAATGTTGCAGTGGATGATAACAGATCCACCAAAACCCAAAATCAAATCACATGCATCAGGGAGTTATGTCCAATTGAGTGAAGCTTAA 2970 0.3424 MNQRQPQTRGKLNHMQTGIRGNQEPEVKHNHMQNGTRGKSGIRGNHELEAKHNHMQTPEATKGNDYTVKPTTQELLVRDLHDNTWTFKHTHCGRPKRHVLSSGWNLFVRSKRLKVGDTVIFIRRANRQQASSPDSMHSGVLAVVAQALANRSPWTVYYNPRVCTSEFVIPHAKYIKAKHLSQLSVGLRFGMMFETQEFCKHSGVGRAGXXXXXXXXXREKPNRVSSWDIDLLISDMTFTLNPERLQLLDTWSCQRKNKRKDSRVVDVEDDLIQIRTNKHQEVLFKKLKEVHTRSDNTSSPIISDAVDATATALPVINTTKDIIPAMTRALCSNDPAARLEAITQFSKLLSMCMNAIHTLNVLAMDDIPQLQAMAASAFDTRTIMEDGVVPLLVQLLSSSSDDLKEMAVLALSNLVGDSTSTRDCVLNHGALLPLLSLLSNPSTTKLSMLKNATWTLLKLCHGKPSPPPTLFEQIQPTLSIFRELLWMPDEEVVQNACLTLSFLVREGSSKMFQAINEANICPKLVGLLLFPRSRVIVYVLQTLGDIVAGDEASTQILINNGVLPCLNKILVTQSDKIILKLACLVISNITAGTESQIQDVIDFHLVGPLVRLTEAEFHIKEAVWAIANGTDGTREQIRSFVSEGCIEALYDLLTDPDPTIVTVCLKGLKNILSAGEINEQQGLYCGVNIYAQMVDECGGLANILILHSDDNNDIYDRIAETFMKYWPLELEKDYHNLHSCVAGSDQDFFFGLNLLSDVAHSIHESTPSQPPSKPYVKVSQMDFLFQFPDHIQPYINNIVDVEADGNCGYRAIAALIGGSKDDWPLVRDELDKELGLHLDLYERLFRGRLQELRSSLRVCGKEFVGMNKWMSIPDMGYVIATTYKLILVSLSNTLSRTFFPLRGSPPPNQSTRHVICIGFVDGNHWVQVFLKAECPLPIIADKWEEFCYPEARPWPTAYIPQMLQWMITDPPKPKIKSHASGSYVQLSEA 989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03332 989 Gene3D - 45 131 IPR015300 -
Car05g03332 989 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 387 414 IPR000225 GO:0005515
Car05g03332 989 Coils Coil 989 989 - -
Car05g03332 989 MobiDBLite consensus disorder prediction 1 20 - -
Car05g03332 989 SMART B3_2 31 134 IPR003340 GO:0003677
Car05g03332 989 SUPERFAMILY DNA-binding pseudobarrel domain 66 126 IPR015300 -
Car05g03332 989 SMART arm_5 550 591 IPR000225 GO:0005515
Car05g03332 989 SMART arm_5 508 548 IPR000225 GO:0005515
Car05g03332 989 SMART arm_5 633 673 IPR000225 GO:0005515
Car05g03332 989 SMART arm_5 593 631 IPR000225 GO:0005515
Car05g03332 989 SMART arm_5 418 461 IPR000225 GO:0005515
Car05g03332 989 SMART arm_5 465 505 IPR000225 GO:0005515
Car05g03332 989 SMART arm_5 376 416 IPR000225 GO:0005515
Car05g03332 989 ProSiteProfiles B3 DNA-binding domain profile. 74 144 IPR003340 GO:0003677
Car05g03332 989 Pfam Auxin response factor 145 202 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car05g03332 989 Pfam B3 DNA binding domain 68 124 IPR003340 GO:0003677
Car05g03332 989 CDD B3_DNA 69 121 IPR003340 GO:0003677
Car05g03332 989 Pfam Armadillo/beta-catenin-like repeat 381 415 IPR000225 GO:0005515
Car05g03332 989 Pfam Armadillo/beta-catenin-like repeat 422 460 IPR000225 GO:0005515
Car05g03332 989 Gene3D - 322 726 IPR011989 -
Car05g03332 989 PANTHER IMPORTIN ALPHA 260 733 - -
Car05g03332 989 PANTHER IMPORTIN SUBUNIT ALPHA-4 260 733 - -
Car05g03332 989 SUPERFAMILY ARM repeat 268 725 IPR016024 -
Car05g03332 989 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03332 Car-Chr5 78051639 78056999 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03332 65 230 B3 DNA Binding Superfamily AT1G19850 49.751 5.02e-48 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Car05g03332 Auxin_resp 7.2e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03332 K15042 - cam:101490719 420.624