Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03327 ATGAGTTGTTTTTCTTGCTACGTTTCTCGTCGGAAAAAAGATGTTAGCAGAGTCGAAGTTGATAATGGTTCTCGATCTGCTTCTACTGCAGGGAATGGAGGAACGAACGCAACCGAAAGGAAGAAAGAATGTTTTTCAGAGGCAAAAGGGAAGAATGCGAGAAATGGCCAAAGCAGTACTCCGGCAGCTAGTTTCGGTTTTCGCGAACTAGCTGCAGCTACAAGGGGTTTTAAGGAAGCTAATTTGATTGGTGAAGGTGGTTTTGGAAGAGTTTATAAAGGCCGGCTTTCAACCGGCGAGGTTGTTGCTGTAAAACAATTAAGTCATGATGGTCGTCAAGGTTTTCAGGAATTTGTGACAGAGGTTCTTATGCTAAGTTTGCTACACCATTCTAATCTTGTTAAGTTAATTGGCTACTGCACTGATGGAGATCAAAGGCTTTTGGTTTATGAATACATGCCTATGGGATCTCTTGAAGATCATCTTTTTGATCTTACCCAAGACAAAGAACCTCTAAGTTGGAGTTCTCGAATGAAAATTGCTGTTGGAGCAGCTCGAGGCCTTGAGTATCTCCATTGTAAAGCAGACCCGCCTGTTATCTATCGAGATTTGAAATCTGCGAACATCTTATTAGACAACGACTTCAACCCAAAACTGTCAGATTTTGGGCTTGCTAAACTAGGACCTGTTGGAGACAACACTCATGTTTCAACCAGAGTGATGGGTACATATGGCTACTGTGCACCAGAATATGCGATGAGTGGAAAATTAACACTCAAATCTGATATCTACAGCTTTGGTGTGGTTTTGTTGGAGTTGATCACTGGACGTAGGGCAATAGATTCTAGTAAAAGACCAGGAGAGCAAAACCTAGTTTCATGGTCTCGCCCATATTTCAGTGACCGGAGAAAGTTTGTACATATGGCTGACCCTCTTTTGCAAGGACTCTTCCCTGTCCGCTGTTTGCATCAAGCAATTGCTATAACTGCTATGTGTCTCCAGGAGCAACCAAAATTCCGTCCACTCATCGGTGATATTGTTGTTGCACTGGAATACCTAGCTTCTCAGAATATCCCTGAAACCCATAGACATGGTGTGCGCAGCCCACAGCTGCAATCACCTTCCAAAATGGACAGAAATTAA 1143 0.4296 MSCFSCYVSRRKKDVSRVEVDNGSRSASTAGNGGTNATERKKECFSEAKGKNARNGQSSTPAASFGFRELAAATRGFKEANLIGEGGFGRVYKGRLSTGEVVAVKQLSHDGRQGFQEFVTEVLMLSLLHHSNLVKLIGYCTDGDQRLLVYEYMPMGSLEDHLFDLTQDKEPLSWSSRMKIAVGAARGLEYLHCKADPPVIYRDLKSANILLDNDFNPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLLELITGRRAIDSSKRPGEQNLVSWSRPYFSDRRKFVHMADPLLQGLFPVRCLHQAIAITAMCLQEQPKFRPLIGDIVVALEYLASQNIPETHRHGVRSPQLQSPSKMDRN 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03327 380 ProSitePatterns Protein kinases ATP-binding region signature. 83 105 IPR017441 GO:0005524
Car05g03327 380 MobiDBLite consensus disorder prediction 21 36 - -
Car05g03327 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Car05g03327 380 Gene3D Phosphorylase Kinase; domain 1 37 152 - -
Car05g03327 380 SMART serkin_6 77 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g03327 380 MobiDBLite consensus disorder prediction 17 61 - -
Car05g03327 380 ProSiteProfiles Protein kinase domain profile. 77 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g03327 380 SUPERFAMILY Protein kinase-like (PK-like) 59 351 IPR011009 -
Car05g03327 380 Pfam Protein kinase domain 78 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g03327 380 PANTHER OS07G0668900 PROTEIN 1 363 - -
Car05g03327 380 CDD STKc_IRAK 83 351 - -
Car05g03327 380 PANTHER OS07G0668900 PROTEIN 1 363 - -
Car05g03327 380 Gene3D Transferase(Phosphotransferase) domain 1 153 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03327 Car-Chr5 78004764 78008660 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03327 1 355 Glycoside Hydrolase AT3G07070 59.218 5.56e-156 443
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Car05g03327 Pkinase 2.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03327 - - gmx:100796595 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03327 05 78004764 78008660 Car05g03327 05 78004764 78008660 ECH