Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03326 ATGGGAAACTGTTTAGCTAAGTCAGATGATGGTGCGAAAGTGGATGGAAAAATAGTGAGTCAAAATCTAAAAATGTTCACATTGGAAGAGTTGAAAAGTGCGACAAGAAACTTCAGACCAGACACGATGGTTGGTGAAGGTGGTTTTGGTCGTGTTTTCAAAGGATGGATAGACCCAAACAGTTGCAGGCCTTCCAAAGTTGGTGTTGGAATTCCCGTTGCTGTTAAAAAGTCCAACCCTGATAGCCTTCAAGGTTTACAAGAATGGCAGAGTGAAGTGAAATTTTTGGGGAAGTTCTCTCATCCAAATCTTGTTAAGCTACTTGGATACTGCTGGGAGGAAGATCAATTCTTGTTGGTGTACGAATACATGCAAAAGGGTAGCTTGGAAAGCCACCTCTTCAGaaAAGGACCAGAAGCACTTTCTTGGGATATAAGGCTCAAGATAGCAATAGGAGCTGCAAGAGGTTTGGCTTTCTTGCACACTTCACAAAATTCTGTTATCTATAGAGACTTCAAGTCCTCCAACATTTTGCTTGATGGGGACTTCAATGCAAAGCTCTCTGACTTCGGATTGGCTAAGTTTGGACCGGTGAGTGGTAAATCCCACGTCACCACAAGGGTCATGGGAACCTATGGTTACGCAGCACCAGAATACATGGCTACAGGCCATCTCTATGTGAAAAGCGACGTATATGGATTTGGTGTTGTTCTACTAGAAATGTTGACAGGCTTAATAGCACTAGACAAAAATAGGCCAACAAATAAGCTGAACTTGGTGGATTTCACAATTGGATGTCTTAGTGACAGAAAGAAACTCAAAACAATTATGGATCATAGGATGAACGAACAATATTCATTAACAGCAGCACTTCAAGTATCACACCTTGTACTCAAATGTTTAGAATCTGACCCCAAAAATAGACCATCTATGGAACAAGTTTTGGAAACTTTAGAAAAGGCTCAAACTATAAAATATAAACCCAAACTCAAGAAATCAAGAATTGCTGTGCATCAAAAAGACAAGAGATCTATGGAGCATCCTCACAATAATGGTCACTCTAAAACAAGAACTCATTCCCCTCAATAG 1089 0.404 MGNCLAKSDDGAKVDGKIVSQNLKMFTLEELKSATRNFRPDTMVGEGGFGRVFKGWIDPNSCRPSKVGVGIPVAVKKSNPDSLQGLQEWQSEVKFLGKFSHPNLVKLLGYCWEEDQFLLVYEYMQKGSLESHLFRKGPEALSWDIRLKIAIGAARGLAFLHTSQNSVIYRDFKSSNILLDGDFNAKLSDFGLAKFGPVSGKSHVTTRVMGTYGYAAPEYMATGHLYVKSDVYGFGVVLLEMLTGLIALDKNRPTNKLNLVDFTIGCLSDRKKLKTIMDHRMNEQYSLTAALQVSHLVLKCLESDPKNRPSMEQVLETLEKAQTIKYKPKLKKSRIAVHQKDKRSMEHPHNNGHSKTRTHSPQ 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03326 362 Pfam Protein tyrosine and serine/threonine kinase 42 318 IPR001245 GO:0004672|GO:0006468
Car05g03326 362 MobiDBLite consensus disorder prediction 329 362 - -
Car05g03326 362 Gene3D Phosphorylase Kinase; domain 1 9 123 - -
Car05g03326 362 PANTHER OS01G0588500 PROTEIN-RELATED 13 343 - -
Car05g03326 362 SUPERFAMILY Protein kinase-like (PK-like) 19 319 IPR011009 -
Car05g03326 362 ProSiteProfiles Protein kinase domain profile. 38 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g03326 362 ProSitePatterns Protein kinases ATP-binding region signature. 44 77 IPR017441 GO:0005524
Car05g03326 362 PANTHER SERINE/THREONINE-PROTEIN KINASE CX32, CHLOROPLASTIC-RELATED 13 343 - -
Car05g03326 362 CDD STKc_IRAK 44 320 - -
Car05g03326 362 MobiDBLite consensus disorder prediction 339 353 - -
Car05g03326 362 Gene3D Transferase(Phosphotransferase) domain 1 124 344 - -
Car05g03326 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03326 Car-Chr5 77995021 77999040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03326 8 318 Glycoside Hydrolase AT3G07070 46.497 2.98e-90 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Car05g03326 PK_Tyr_Ser-Thr 2.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03326 - - aprc:113865973 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03326 05 77995021 77999040 Car05g03326 05 77995021 77999040 ECH