Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03309 ATGTCTTTCTCCACAACTTCATTGCTTTCTACAAATTTCTTAGGAAGAAGAAACATGGTGTTAGTTTCACCCCCGACCCCCAAAACAACCAAACCATCCATTTCACTACCAATTTTCTTCAAAACGCGATTCTCAAACTCTCAAAAATCAATTAACGATAATAATTCAGAACCACTCAAATCAGCTGCTGTATCAGCTCTTATCTTATCCTCAATGACTTTAAATATAACTCCGGTGGCTCTCGCCGCCGACAACATCACACCACCACCACCTCCGGTACTCGAAGCACAACCAAACAAACTAAACCCTTCAAATTCTTCTTCACCTTTCTCTCAAAACATTTCACTCACAGCACCAAAACCACAATCCTCTTCTGATCTACCCGACGGAAACCAATGGCGTTACAGCGAGTTTTTAAACGCAGTTAAAAAAGGTAAAGTTGAAAGAGTTCGGTTCAGTAAAGACGGTTCCGTCCTTCAACTAACCGCCGTTGACGGACGTCGAGCAAACGTTATCGTTCCAAACGACCCTGACCTAATCGACATTCTAGCGATGAACGGCGTTGATATTTCCGTTTCCGAAGGTGAATCAGGTAACGGTTTGTTCAATTTCGTTGGTAGTTTATTGTTACCGTTCCTCGCATTCGCTGGTTTGTTCTTGATATTTCGTCGAGCCCAAGGCGGACCCGGTGGGCCTGGTGGGCTTGGAGGGCCCATGGATTTCGGTAGATCTAAATCAAAATTTCAAGAGGTACCGGAGACGGGTGTAACTTTTGCTGACGTGGCCGGTGCTGATCAAGCGAAACTTGAATTACAAGAAGTTGTTGATTTTTTGAAGAATCCTGATAAGTACACTGCATTGGGTGCTAAGATTCCGAAAGGATGTCTTTTGGTGGGGCCACCGGGAACCGGAAAAACACTATTGGCACGGGCGGTAGCCGGTGAAGCCGGTACACCGTTCTTTTCGTGTGCGGCTTCGGAATTTGTGGAACTGTTTGTTGGTGTTGGTGCTTCTAGGGTTAGGGATTTGTTTGAGAAAGCGAAGTCGAAAGCGCCTTGTATTGTTTTCATTGATGAAATTGATGCTGTTGGGAGACAGAGAGGAGCTGGACTTGGTGGTGGGAATGACGAGAGGGAACAAACTATTAATCAGTTGTTGACGGAGATGGATGGATTTTCTGGTAATTCTGGTGTTATTGTTTTGGCTGCTACTAATAGACCTGATGTTCTTGATTCGGCGTTGCTTAGACCTGGAAGGTTTGATAGGCAAGTTACTGTCGATAGACCTGATGTTGCCGGTAGAGTTAAAATCCTTCAGGTGCATTCTAGAGGAAAAGCACTTGCAAAGGATGTTGACTTTGATAAAATTGCCAGGAGAACCCCAGGATTCACAGGGGCTGATCTGCAGAATCTGATGAATGAAGCAGCTATTCTTGCAGCCAGACGTGACCTCAAGGAAATAAGCAAAGATGAAATATCTGATGCGCTTGAAAGGATCATTGCTGGACCAGAAAAGAAAAATGCCGTTGTCTCAGACGAGAAGAAGAAATTAGTAGCCTATCATGAGGCTGGCCATGCTTTAGTTGGTGCTTTGATGCCTGAATATGACCCTGTAGCCAAGATATCCATTATACCTCGTGGCCAAGCTGGTGGTCTCACCTTTTTCGCCCCCAGTGAAGAGAGGCTTGAGTCTGGATTGTACAGTAGAAGCTACTTGGAAAATCAGATGGCAGTTGCACTCGGTGGAAGGGTTGCCGAAGAGGTCATTTTTGGCCAGGATAATGTCACCACTGGCGCCTCAAATGACTTCATGCAAGTTTCGCGAGTGGCGAGGCAGATGGTTGAGAGATTTGGGTTCAGCAAAAAAATTGGACAAGTTGCCATTGGCGGACCTGGTGGAAATCCATTCTTGGGACAACAGATGGCAACGCAAAAGGATTATTCCATGGCAACTGCTGATGTAGTGGATGCTGAAGTTAGGGAACTGGTTGAGAAAGCCTATTCGAGGGCAACACAAATTATCAACACTCACATTGACATCCTTCACAAGCTTGCTCAACTTCTCATAGAGAAAGAAACTGTTGATGGTGAAGAGTTCATGAGTCTATTTATTGATGGAAAAGCAGAATTGTTTGTTGCATAA 2142 0.4482 MSFSTTSLLSTNFLGRRNMVLVSPPTPKTTKPSISLPIFFKTRFSNSQKSINDNNSEPLKSAAVSALILSSMTLNITPVALAADNITPPPPPVLEAQPNKLNPSNSSSPFSQNISLTAPKPQSSSDLPDGNQWRYSEFLNAVKKGKVERVRFSKDGSVLQLTAVDGRRANVIVPNDPDLIDILAMNGVDISVSEGESGNGLFNFVGSLLLPFLAFAGLFLIFRRAQGGPGGPGGLGGPMDFGRSKSKFQEVPETGVTFADVAGADQAKLELQEVVDFLKNPDKYTALGAKIPKGCLLVGPPGTGKTLLARAVAGEAGTPFFSCAASEFVELFVGVGASRVRDLFEKAKSKAPCIVFIDEIDAVGRQRGAGLGGGNDEREQTINQLLTEMDGFSGNSGVIVLAATNRPDVLDSALLRPGRFDRQVTVDRPDVAGRVKILQVHSRGKALAKDVDFDKIARRTPGFTGADLQNLMNEAAILAARRDLKEISKDEISDALERIIAGPEKKNAVVSDEKKKLVAYHEAGHALVGALMPEYDPVAKISIIPRGQAGGLTFFAPSEERLESGLYSRSYLENQMAVALGGRVAEEVIFGQDNVTTGASNDFMQVSRVARQMVERFGFSKKIGQVAIGGPGGNPFLGQQMATQKDYSMATADVVDAEVRELVEKAYSRATQIINTHIDILHKLAQLLIEKETVDGEEFMSLFIDGKAELFVA 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03309 713 Hamap ATP-dependent zinc metalloprotease FtsH [ftsH]. 17 713 IPR005936 GO:0004176|GO:0004222|GO:0016020
Car05g03309 713 Gene3D Peptidase M41 505 708 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Car05g03309 713 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 1, CHLOROPLASTIC-RELATED 60 705 - -
Car05g03309 713 CDD AAA 262 427 - -
Car05g03309 713 PANTHER METALLOPROTEASE M41 FTSH 60 705 - -
Car05g03309 713 Gene3D - 246 428 IPR027417 -
Car05g03309 713 Pfam ATPase family associated with various cellular activities (AAA) 296 427 IPR003959 GO:0005524|GO:0016887
Car05g03309 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 255 499 IPR027417 -
Car05g03309 713 TIGRFAM FtsH_fam: ATP-dependent metallopeptidase HflB 202 702 IPR005936 GO:0004176|GO:0004222|GO:0016020
Car05g03309 713 Pfam AAA+ lid domain 450 493 IPR041569 -
Car05g03309 713 SMART AAA_5 291 430 IPR003593 -
Car05g03309 713 Pfam Peptidase family M41 509 702 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Car05g03309 713 MobiDBLite consensus disorder prediction 98 129 - -
Car05g03309 713 ProSitePatterns AAA-protein family signature. 398 416 IPR003960 GO:0005524|GO:0016887
Car05g03309 713 Gene3D - 127 199 - -
Car05g03309 713 MobiDBLite consensus disorder prediction 90 129 - -
Car05g03309 713 Gene3D - 429 504 - -
Car05g03309 713 SUPERFAMILY FtsH protease domain-like 509 703 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03309 Car-Chr5 77787522 77791769 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03309 252 704 Miscellaneous Gene Families AT5G53170 49.559 4.30e-136 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03309 K03798 - vvi:100250509 1160.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03309 05 77787522 77791769 Car05g03309 05 77787522 77791769 ECH
Car04g03624 04 65691694 65693582 Car05g03309 05 77787522 77791769 PCT