Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03301 ATGTCGTCGGCGCTGAAAACTAATAGCTCCGATGACGAAGGCAAACAGTACCCTCCCCCGCTCGCTTCTCACAACGACGTCGTTAATGACCCTACTCTCTTTTGGGACACTCTTAGACGCTTTCACTTTCTTATGGCTACCAAATTCATGATTCCTGTGATTGGAGGTAAGGAACTCGATTTGCACGTTCTTTACGTGGAAGTTACAAGAAGAAGCGGTTATGAGAAGGTAGTTGTGGAGAAGAAATGGAGAGAAGTAGGTAGTGTATTTAGATTCTCATCTACGACTACAAGCGCTTCTTTTGTACTCAGAAAACATTACTTCACTCTTCTTTACCATTACGAACAAGTTCACTTCTTCAAAGTCAAGGGTCCTCTATTCACTCCTTCAACAGATTCATTTTCTGGAAACAGTTCCTCGTGGAGACCTGAATTAGCTATTGTTCAATATTCACCTAAGATGGTAAACATTGATAGTCCTCAATCACATGATGAAGAGCATGTAGATAGTTCATGTCTTTTGGGAAAAGGAACAATCGAAGGAAAATTTGATTGTGGTTATCTAGTGTCAGTGAAATTGGGTTCTGAAGTTCTTACAGGGGTGCTTTACCATCCAGAACAAGTGGTTACTTCACCATTGGTTCCACAATTCGACAGTGCCATTGTACCATTCAATCACAAATTGGGTAGAAGGAGGAGACGAAAAAGAAGGTGGGACCCCAATTATCCAAAGCCAAATAGGAGTGGCTATAACTTTTTCTTTGCTGAAAAACATTACAAGCTCAAAGAACTCTATCCAAACAGAGAAAGGGAGTTCACTAAAATGATTGGTCAGTCATGGAATACTCTCAGCCCTGAAGAAAGAATGGTTTACCAAAACATTGGTTTAAGGGACAAAGAAAGGTACAAACGAGAATTGACGGAATACAAAGAGAAAATGAAGATTGGGCAGACCAAAGAAGTTGGACGTCCATAA 975 0.4062 MSSALKTNSSDDEGKQYPPPLASHNDVVNDPTLFWDTLRRFHFLMATKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVVEKKWREVGSVFRFSSTTTSASFVLRKHYFTLLYHYEQVHFFKVKGPLFTPSTDSFSGNSSSWRPELAIVQYSPKMVNIDSPQSHDEEHVDSSCLLGKGTIEGKFDCGYLVSVKLGSEVLTGVLYHPEQVVTSPLVPQFDSAIVPFNHKLGRRRRRKRRWDPNYPKPNRSGYNFFFAEKHYKLKELYPNREREFTKMIGQSWNTLSPEERMVYQNIGLRDKERYKRELTEYKEKMKIGQTKEVGRP 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03301 324 Pfam ARID/BRIGHT DNA binding domain 33 115 IPR001606 GO:0003677
Car05g03301 324 ProSiteProfiles ARID domain profile. 28 119 IPR001606 GO:0003677
Car05g03301 324 SMART hmgende2 242 311 IPR009071 -
Car05g03301 324 Gene3D High mobility group box domain 228 323 IPR036910 -
Car05g03301 324 Coils Coil 299 319 - -
Car05g03301 324 Gene3D - 21 124 IPR036431 GO:0003677
Car05g03301 324 SMART ARID_2 25 115 - -
Car05g03301 324 SMART bright_3 29 120 IPR001606 GO:0003677
Car05g03301 324 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 10 320 - -
Car05g03301 324 SUPERFAMILY HMG-box 240 313 IPR036910 -
Car05g03301 324 MobiDBLite consensus disorder prediction 1 23 - -
Car05g03301 324 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 243 310 IPR009071 -
Car05g03301 324 CDD HMGB-UBF_HMG-box 243 306 - -
Car05g03301 324 CDD ARID_HMGB9-like 30 115 IPR045303 GO:0003677
Car05g03301 324 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 10 320 - -
Car05g03301 324 Pfam HMG (high mobility group) box 243 310 IPR009071 -
Car05g03301 324 SUPERFAMILY ARID-like 24 125 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03301 Car-Chr5 77713723 77715948 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03301 15 315 ARID Transcription Factor Family AT1G76110 64.286 6.21e-132 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Car05g03301 ARID 3.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03301 - - gmx:100784746 513.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03301 05 77713723 77715948 Car05g03301 05 77713723 77715948 ECH