Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03278 ATGGCTGTACATATGAAATATCGTCTTATTACTTACTCTGAAGAGATTGTCGATGGACAACCTATATTTGTATCATCAAATTGTCTTCCAACCAAGGCGTTGAAATATGAACCTGCAGGTCATTCTTTTCATTCAGCTGCCCTTAAACTTCTTGGTGTTAAGGAGGAAAAGGACAAAGAAGCTGATATTAAGAAAGTGGTCGAGGAGAAAGAACAGACTTATCTGCCTTCTGATTCTTATAGTAGCAAGGGCAAAAAGAAATCCGGTGATGGAGATAAGCAGCAGCAGGATCACTATGCATTATTGGGTTTGAGCCATCTTAGGTATCTTGCTACAGAGGACCAAATAAGAAAAAGCTATCGTGAAACTGCTTTGAGGTTTCATCCGGACAAACAGGCTTCTCTTGTTCTTTTGGAAGTAACTGAAGCTGCAAAACAGGCCAAAAAGGAGGAGATAGAAACTCATTTTAAGGCAATCCAGGAGGCGTATGAAGTGTTGGTTGATCCTTTAAAGAGGAGGATTTATGATTCTACTGACGAGTTTGATGATGAAATTCCCACTGATTGTGCTCCACAAGACTTCTTCAAGGTGTTTGGCCCTGCTTTTTTGAGGAACGGGCGGTGGTCTGTTACTCAACCAATTCCGTTTCTTGGTGATGATAAGACTCCAATAAAAGAAGTTGACAGTTTCTACAATTTTTGGTACTCCTTTAAGAGTTGGAGGGAGTTTCCCCATGCCGACGAGTTTGATCTCGAGCAAGCTGATTCTCGGGATCATAGAAGGTGGATGGAAAGGCAGAATGCAAAACTGTCGGAAAAAGCTAGGAAAGAAGAGTATGCGCGTGTTCGCACTCTTGTTGATAATGCTTACAAGAGGGATCCTAGAATATTGAGAAGaaaggaagaggaaaaggctgaaaagaaaaggaaaaaggaGGCCAAGTACATGGCAAAGAGGTTGCAGgaggaagaagaagccagaattgcagaagaggagaagcgacgaaaagcagaggaagaTAAACTAGCTGCTGAAGCTGCTTTGCAACAGAAGAAGGTGAAGGAAAAAGAGAAAAAGCTGTTGCGGAAGGAGCGAACTCGCCTTCGAAATCTCTCGGGAACTATCTCATCACAACGTGTACTTGACATTTCCGTAGACGATGTAGAAAAGCTTTGCATGTCATTTGATCTTTTACAGCTGAGGGGTTTATGTGAGAAAATGGAAGGCAAAGAGGTGCTGGAGCAAGCAAAAGCTATAAGAGATGCACTGAGTTGCGAGAAAGACGATGCTGATGAGAAAAGCAATCAAAGTATTCAACAAAATGGGTCTGTGAAGGCTAATGGAAACAGTAGTTCTCTTGAAGCCTACAAAGAGAAGAAGGAGAAGCCTTGGACCAAAGAAGAGATTGAGCTATTGAGGAAAGGGATGGTTAAGTTTCCCAAGGGAACTTCAAGGAGATGGGAGGTTGTTTCAGAATACATAGGCACTGAAAGATCTGTTGAGGAAATTATGAAAGCAACAAAAACCGTTCTCCTTCAGAAGCCCGATACATCCAAAGCTTTTGACACTTTTCTTGAGAAAAGGAAACCTGCTGTATCAATTGCATCTCCACTGTCAACCAGGGAAGAATTGGAAGGGGTTTCAATATCAGCAACAACACCTGAAAATAGTACTGCTGCCACCTCAACAACAACACCAGAAAATAGTACTGCTGCCGCCTcaacaacaacaacaacacctccaccaccaacagcaacgcccataccaacaccagcggtaacaacaacaacaattaacagcaccaGCTCAGAAGAGTCTCAAGGAGTTTCCGAACAAGATGCATGGTCTGCAGTGCAGGAGAGAGCACTAGTTCAAGCTTTGAAAACCTTTCCAAAGGAAGCTAATCAGAGATGGGAGCGAGTATCTGCAGCTGTACCCGGAAAGACTGTGAATCAATGCAAGAAGAAATTTGCCATGATGAAGGAAAATTTCAGGAACAAGAAAACTGCAGTTTGA 2016 0.3859 MAVHMKYRLITYSEEIVDGQPIFVSSNCLPTKALKYEPAGHSFHSAALKLLGVKEEKDKEADIKKVVEEKEQTYLPSDSYSSKGKKKSGDGDKQQQDHYALLGLSHLRYLATEDQIRKSYRETALRFHPDKQASLVLLEVTEAAKQAKKEEIETHFKAIQEAYEVLVDPLKRRIYDSTDEFDDEIPTDCAPQDFFKVFGPAFLRNGRWSVTQPIPFLGDDKTPIKEVDSFYNFWYSFKSWREFPHADEFDLEQADSRDHRRWMERQNAKLSEKARKEEYARVRTLVDNAYKRDPRILRRKEEEKAEKKRKKEAKYMAKRLQEEEEARIAEEEKRRKAEEDKLAAEAALQQKKVKEKEKKLLRKERTRLRNLSGTISSQRVLDISVDDVEKLCMSFDLLQLRGLCEKMEGKEVLEQAKAIRDALSCEKDDADEKSNQSIQQNGSVKANGNSSSLEAYKEKKEKPWTKEEIELLRKGMVKFPKGTSRRWEVVSEYIGTERSVEEIMKATKTVLLQKPDTSKAFDTFLEKRKPAVSIASPLSTREELEGVSISATTPENSTAATSTTTPENSTAAASTTTTTPPPPTATPIPTPAVTTTTINSTSSEESQGVSEQDAWSAVQERALVQALKTFPKEANQRWERVSAAVPGKTVNQCKKKFAMMKENFRNKKTAV 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03278 671 Coils Coil 53 73 - -
Car05g03278 671 SMART dnaj_3 96 171 IPR001623 -
Car05g03278 671 PRINTS DnaJ domain signature 102 120 IPR001623 -
Car05g03278 671 PRINTS DnaJ domain signature 120 135 IPR001623 -
Car05g03278 671 PRINTS DnaJ domain signature 151 171 IPR001623 -
Car05g03278 671 CDD SANT 614 661 IPR001005 -
Car05g03278 671 Pfam Myb-like DNA-binding domain 614 659 IPR001005 -
Car05g03278 671 ProSiteProfiles Myb-like domain profile. 456 511 IPR001005 -
Car05g03278 671 Gene3D DnaJ domain 80 188 IPR036869 -
Car05g03278 671 SUPERFAMILY Homeodomain-like 462 505 IPR009057 -
Car05g03278 671 MobiDBLite consensus disorder prediction 74 94 - -
Car05g03278 671 SUPERFAMILY Homeodomain-like 613 667 IPR009057 -
Car05g03278 671 SUPERFAMILY Chaperone J-domain 95 202 IPR036869 -
Car05g03278 671 MobiDBLite consensus disorder prediction 428 459 - -
Car05g03278 671 MobiDBLite consensus disorder prediction 435 453 - -
Car05g03278 671 MobiDBLite consensus disorder prediction 590 609 - -
Car05g03278 671 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 2 668 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Car05g03278 671 Coils Coil 303 371 - -
Car05g03278 671 MobiDBLite consensus disorder prediction 536 609 - -
Car05g03278 671 ProSiteProfiles SANT domain profile. 610 665 IPR017884 -
Car05g03278 671 MobiDBLite consensus disorder prediction 543 579 - -
Car05g03278 671 ProSiteProfiles Myb-like domain profile. 612 661 IPR001005 -
Car05g03278 671 ProSitePatterns Nt-dnaJ domain signature. 156 175 IPR018253 -
Car05g03278 671 CDD DnaJ 97 168 IPR001623 -
Car05g03278 671 ProSiteProfiles dnaJ domain profile. 97 179 IPR001623 -
Car05g03278 671 SMART sant 460 513 IPR001005 -
Car05g03278 671 SMART sant 611 663 IPR001005 -
Car05g03278 671 PANTHER DNAJ DOMAIN, MYB-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED 2 668 - -
Car05g03278 671 Pfam DnaJ domain 97 176 IPR001623 -
Car05g03278 671 CDD SANT 463 505 IPR001005 -
Car05g03278 671 Coils Coil 413 433 - -
Car05g03278 671 Gene3D - 456 514 - -
Car05g03278 671 Gene3D - 607 671 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03278 Car-Chr5 77510645 77513611 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03278 98 297 C2H2 Transcription Factor Family AT1G74250 29.707 7.43e-21 95.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Car05g03278 DnaJ 2.8e-17 CL0392