Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03263 atGTCGACTACTACTCCCAGCGGCGAGGATCGAATTGAACCACCCCTTATTCCCCACCATTTTTCTCAATTCAAATTCGACCTATGTCATTCTCCTTCTCCCCATTTTACTATTCTTCCGTTGAGTCAAAGAAATGAAATTAATAATGTCAAGTTGCACGCATGTAATGTTGAAGCATTTCCTACTCATCAGAGCAACACTGTTAATCTTCCTCCTTCTATTCAAACCGAGCCTATCCAAAGAAGAAAGCTTAATGGAAAATCAAAAGTTTCAAGAAATGCAAAATCTGCAAGTAAGAGATCAAATACAGAATCTCCGAATTCGACTGCAGTTAACAATTGTCGTTATGACAGTTCCTTAGGATTGTTAACCAAGAAATTTGTCAGTTTGATCCAAGATGCTAAGGATGGTACCCTTGATCTAAATCAAACTGCTGAGGTCTTAGAGGTTCAAAAAAGGAGAATTTATGACATTACGAATGTTCTTGAAGGAATAGGATTGATAGAGAAAACTTCAAAGAACCATATACGGTGGAAGGGATGTGATGGACTTGGGCCACGAGAACTGGAGGATCAAGTTAATGCTCTAAAGGCTGAAGTTGAAAATTTATATGATGAGGAATGCAAACTTGAGGAGTGTATAAGCAAAAAGAAGGAGCTTATACAGAACCTGGAGAAAGGTGAAAACTCCCAAAAGTACCTTTTTTTTACCAAGGAAGATATTCTTACCCTTCCATGCTTCCAGAATAAGCAACTTATTGCAATCAAGGCTCCAAAAGCTAGTTTCATTGAGGTCCCTGATCCTGATGAGGAATTAGGCTTCCACCAAAGACAGTACAGAATGATTGTTAGAAGTGCAACTGGACCGATAACTCTGTACCTCTTGAACAAGCACGACCACAAGTTTGAGGGTGTGAGTGTCAAGCAGGCAAAGTTAATGGATCCATCGTGGAGTAGCAACAACCTTAGAATGGAGGATATGGAAATATTAGAAAGCCAAGGCTGTGAGAAAAACCCTTCTGGGAATTTAGGTTCACTTGGCTCAGAGGCTTTTGGAATTCAACAAATTACTCCTACCGATTTTGATGTTGATAATGACTATTGGTTTCAATCAGATCCCAATGTTGGCCTAACACAATTGTGGGGGTAG 1149 0.396 MSTTTPSGEDRIEPPLIPHHFSQFKFDLCHSPSPHFTILPLSQRNEINNVKLHACNVEAFPTHQSNTVNLPPSIQTEPIQRRKLNGKSKVSRNAKSASKRSNTESPNSTAVNNCRYDSSLGLLTKKFVSLIQDAKDGTLDLNQTAEVLEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGCDGLGPRELEDQVNALKAEVENLYDEECKLEECISKKKELIQNLEKGENSQKYLFFTKEDILTLPCFQNKQLIAIKAPKASFIEVPDPDEELGFHQRQYRMIVRSATGPITLYLLNKHDHKFEGVSVKQAKLMDPSWSSNNLRMEDMEILESQGCEKNPSGNLGSLGSEAFGIQQITPTDFDVDNDYWFQSDPNVGLTQLWG 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03263 382 PANTHER TRANSCRIPTION FACTOR E2F 33 382 IPR015633 GO:0000978|GO:0006357
Car05g03263 382 Coils Coil 210 230 - -
Car05g03263 382 MobiDBLite consensus disorder prediction 63 81 - -
Car05g03263 382 SMART E2F_TDP_2 115 180 IPR003316 GO:0005667|GO:0006355
Car05g03263 382 Coils Coil 186 206 - -
Car05g03263 382 Pfam E2F transcription factor CC-MB domain 196 295 IPR032198 GO:0046983
Car05g03263 382 Pfam E2F/DP family winged-helix DNA-binding domain 117 180 IPR003316 GO:0005667|GO:0006355
Car05g03263 382 Gene3D - 187 298 - -
Car05g03263 382 MobiDBLite consensus disorder prediction 63 111 - -
Car05g03263 382 SUPERFAMILY "Winged helix" DNA-binding domain 115 178 IPR036390 -
Car05g03263 382 Gene3D - 110 182 IPR036388 -
Car05g03263 382 MobiDBLite consensus disorder prediction 90 111 - -
Car05g03263 382 SUPERFAMILY E2F-DP heterodimerization region 191 297 IPR037241 -
Car05g03263 382 CDD E2F_DD 191 298 IPR032198 GO:0046983
Car05g03263 382 PANTHER TRANSCRIPTION FACTOR E2FC 33 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03263 Car-Chr5 77393780 77398137 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03263 1 381 E2F-DP Transcription Factor Family AT1G47870 42.453 1.99e-92 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Car05g03263 E2F_CC-MB 1.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03263 K06620 - gmx:100797301 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03263 05 77393780 77398137 Car05g03263 05 77393780 77398137 ECH