Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03253 atggcaacaacaacaacaacaacGGCTATATTTCTAACCTTCATTGCAGCAACACTAACAACACACATAACCACCACAACACATGCAACAGACACCACCAACACAACACACTCCGAAATCGAATCTCTAACAAAGTTCAAAGAAAACCTTCAAGACCCACTCAACTCACTAACAACATGGAATCCATCATCACCATCAGCACCATGTGACTGGCACGGCATTCTCTGTTACAATAACAGAGTTCACCAAATTCTCTTACCACGTCTTCAACTCACCGGTCctctctctccttctctctccaatctctctcAACTTCGCAAACTCAGTCTCCATTCCAACAACTTCAACTCCTCCATCCCTTCCTCTCTCTCTCACTGTCTCTTCCTTCGCGCCGTTTATCTTCACAACAACACATTCTCCGGTAACCTCCCTTTTTCACTTCTCAACCTAACAAACCTTCAGATTCTCAATGTAGCTCGTAACTTTCTCTCCGGTTCTCTCCCTAACAATCTCTCTAACTCCCTACGCTTCCTTGACTTGTCGTTCAACTCATTCTCCGGCGACATTCCGGGAAACTTTTCCTCCAAATCTCAACTTCAACTTATTAACCTCTCACACAACGATTTCACCGGCGCAATACCGGTCAAAATCGGAGCTTTACAATATTTGGAATATTTATGGTTGGACAATAATCGACTTAGCGGAACTTTACCTTCTGCGATTGTAAACTGTTCCTCTATGGTACACCTTAGTGTAGAGGATAATTTCATTGGTGGGTTGGTACCTTCCACTATAGGGATGATGCCAAAGCTTCAAGTGCTTTCACTTTCAATGAATCAAATTTCTGGTTTTGTACCCACTTCACTGTTATGCAATGAAGATGTCAACAATAAAAACAAGACTAATCTTAGAATTGTTCAACTTGGGTTTAATAAACTCACGGGTGTTTCAGAACCGCGAAATGGGAAATGTGTTAATTCTTTTTTGGAGTTTTTGGACATTAAAGAGAATCACATTATTCATAATTTGTTTCCTTCTTGGTTGACCAATGTGATTTCTTTGAAAAGTCTTGATCTTTCTGGAAACTCTTTTTCAGGTTCACTGCCTCAAGATATTGGAAATCTTTTATTTTTAGAAGAATTGAGAGTTCCTGATAATTCATTATCTGGTGGAGTTCCAAGTAGCATTGTGAAATGTAGTTTGTTGAAGGTTCTTGATCTTCAACGGAATCGATTCTCGGGTGCCATTCCTTTGTTTCTTGCTGAGTTGAAAAGTTTGAAGGAGTTATCTCTTGGTGGTAACTTTTTTACTGGTTTGATTCCAAAGAGTTATGGAATGTTGTCTGAGTTAGAGATTTTGGATTTAAGTAATAATAAACTGATGGGGATTTTGCCTTTGGAGATTATGCAGTTGGGTAACATGAGTGTTTTGAATCTAAGCAATAATAGATTCTCGGGTCAAATTCCGTTTCGTATTAGAGACTTGAAAGCTTTGCAGGTTCTTAATTTGAGTCAATGTGGTTTTTCTGGTAGTGTTCCAGCTACAATAGGGAATTTGATGAAACTGAGAGTGTTGGATTTAAGCAAGCAAAAACTTTCAGGTGAGTTACCTATTGAGCTTTTTGGATTACCAAGTTTGGAAGTTGTGGCACTTGAGGAAAATCTTTTGAGTGGTTATGTTCCTGAGGGTTTTAGCAGCATTGTTAGTTTATGGTATCTTAATCTTAGTTCTAATGCTTTTGTTGGTAACATTCCAACAACTTACGGTTTTCTAAGTTCCTTAGTTGTTCTTTCTTTGTCTCGCAATTTCATTTCTGGTTCAATACCTAATGAGATTGGCGGTTGTTCTCAACTTGAAGTGCTTCAGCTTCAAGCGAATCGTTTAATAGGTAACATTGTTCCAAGTGTCGTGTCTCGTCTTTTGAGTTTAAAGGAGCTTAATTTAGGACAAAATGGATTGAAAGGTGATATCCCCGATGAGATTTCAAAGTGTTCTTCTTTGAATTCACTTTATTTGGATGGTAATCGCTTAACTGGTCACATACCACAATCCTTGTCAAAACTATCAAATTTGAAGTCTTTGAATCTCTCTTCAAATCAATTGACAGGAGAAATTCCAGTCGAACTTTCGTCCATTTCGGGTTTGAAGTATTTAAATGTGTCCAACAACAACCTCGAAGGCGAAATTCCAAAATTGCTGAGTACTAGATTCAATGACCCTTCTGTGTTTACAATGAACAAGAGGTTATGTGGGAAACCATTGCATAAAGAATGTGCGAAATTGAAAAGACGAAAGAGAAAAAGACTAATAATCATCATAGGCTTGGCAACTGCAGGACTATTTCTTTTATCATTATGTTGTTGTGGCTATGTTTACAGTCTCTTAAGGTGGCGAAAAAAGCTTCGACAAGGTGTAACAAATGAGAAGAAACGAAGTCCAACAAGTGCAGGCTCAAACGGAGAAAGAAACAGTAGAGGAAGCGGTGAAAATGGTGGACCAAAACTCATAGTATTCAACAACAAAATCACTTATGCAGAAACATTAGAAGCGACAAGAAACTTCGATGAAGAAAACGTTTTAAGCCGAGGAAAATTTGGACTTGTTTTTAAAGCTTCATACCAAGATGGAATGGTTTTATCGATTCGTAGACTTCCTAATGGATCATCATTCATGGAAGAAAACACGTTTCGCAAAGAAGCGGAATCATTAGGAAAAGTGAAACATAGAAACTTAACAGTTTTACGAGGCTATTATGCAGGTCCACCACCTGATGTAAGATTATTAGTTTATGATTACATGCCAAATGGAAACTTGGGAACATTGCTACAAGAAGCTTCACAACAAGATGGTCATGTTTTGAATTGGCCAATGCGTCATCTCATTGCATTAGGAATCGCTCGTGGTTTGAGTTTTCTACATTCTGTTTCCATTGTTCATGGTGATGTGAAGCCACAAAATGTTCTTTTTGATGCTGATTTTGAAGCCCATTTATCTGAATTTGGGCTGGACCGATTAACAATGGTAAGCCCAATAGAATTACAGGAGTCGTCGTCTGTATCACAGACAACGACTCCTGTTGGTTCGTTGGGCTACGTGGCACCCGAAGCTTTGTTAACAGGACAAGTAACAAAGGAAGGTGATGTATACAGTTTTGGGATAGTGTTGTTGGAGATTTTAACAGGAAGAAAAGCAGTGATGTTTAGAGAAGATGAAGATATAGTGAAATGGGTGAAGAAACAGTTACAAAGAGGTTTGATTTCGGAGTTGTTGGAACCTGGTTTGCTTGAGATTGATCAAGAATCATCTGAATGGGAAGAGTTTTTGTTAGGTGTTAAAGTTGCACTTCTTTGTACTGGACATGATCCACTTGATAGGCCTTCTATTAATGATGTTGTTTTCATGCTTGAAGGTTGTCGTGTTGGAACTGATATCCCTTCATCTGCTGATCCTACCACATTGCCTTCCCCTGCTTCTTGA 3477 0.3799 MATTTTTTAIFLTFIAATLTTHITTTTHATDTTNTTHSEIESLTKFKENLQDPLNSLTTWNPSSPSAPCDWHGILCYNNRVHQILLPRLQLTGPLSPSLSNLSQLRKLSLHSNNFNSSIPSSLSHCLFLRAVYLHNNTFSGNLPFSLLNLTNLQILNVARNFLSGSLPNNLSNSLRFLDLSFNSFSGDIPGNFSSKSQLQLINLSHNDFTGAIPVKIGALQYLEYLWLDNNRLSGTLPSAIVNCSSMVHLSVEDNFIGGLVPSTIGMMPKLQVLSLSMNQISGFVPTSLLCNEDVNNKNKTNLRIVQLGFNKLTGVSEPRNGKCVNSFLEFLDIKENHIIHNLFPSWLTNVISLKSLDLSGNSFSGSLPQDIGNLLFLEELRVPDNSLSGGVPSSIVKCSLLKVLDLQRNRFSGAIPLFLAELKSLKELSLGGNFFTGLIPKSYGMLSELEILDLSNNKLMGILPLEIMQLGNMSVLNLSNNRFSGQIPFRIRDLKALQVLNLSQCGFSGSVPATIGNLMKLRVLDLSKQKLSGELPIELFGLPSLEVVALEENLLSGYVPEGFSSIVSLWYLNLSSNAFVGNIPTTYGFLSSLVVLSLSRNFISGSIPNEIGGCSQLEVLQLQANRLIGNIVPSVVSRLLSLKELNLGQNGLKGDIPDEISKCSSLNSLYLDGNRLTGHIPQSLSKLSNLKSLNLSSNQLTGEIPVELSSISGLKYLNVSNNNLEGEIPKLLSTRFNDPSVFTMNKRLCGKPLHKECAKLKRRKRKRLIIIIGLATAGLFLLSLCCCGYVYSLLRWRKKLRQGVTNEKKRSPTSAGSNGERNSRGSGENGGPKLIVFNNKITYAETLEATRNFDEENVLSRGKFGLVFKASYQDGMVLSIRRLPNGSSFMEENTFRKEAESLGKVKHRNLTVLRGYYAGPPPDVRLLVYDYMPNGNLGTLLQEASQQDGHVLNWPMRHLIALGIARGLSFLHSVSIVHGDVKPQNVLFDADFEAHLSEFGLDRLTMVSPIELQESSSVSQTTTPVGSLGYVAPEALLTGQVTKEGDVYSFGIVLLEILTGRKAVMFREDEDIVKWVKKQLQRGLISELLEPGLLEIDQESSEWEEFLLGVKVALLCTGHDPLDRPSINDVVFMLEGCRVGTDIPSSADPTTLPSPAS 1158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03253 1158 SUPERFAMILY L domain-like 37 317 - -
Car05g03253 1158 Gene3D Ribonuclease Inhibitor 293 418 IPR032675 -
Car05g03253 1158 PANTHER LRR RECEPTOR-LIKE KINASE 7 1153 - -
Car05g03253 1158 ProSiteProfiles Leucine-rich repeat profile. 690 712 IPR001611 GO:0005515
Car05g03253 1158 Pfam Leucine rich repeat N-terminal domain 38 76 IPR013210 -
Car05g03253 1158 Pfam Leucine Rich Repeat 353 375 IPR001611 GO:0005515
Car05g03253 1158 Gene3D Ribonuclease Inhibitor 194 292 IPR032675 -
Car05g03253 1158 ProSiteProfiles Leucine-rich repeat profile. 449 470 IPR001611 GO:0005515
Car05g03253 1158 Pfam Leucine rich repeat 402 460 IPR001611 GO:0005515
Car05g03253 1158 Pfam Leucine rich repeat 617 677 IPR001611 GO:0005515
Car05g03253 1158 Pfam Leucine rich repeat 521 579 IPR001611 GO:0005515
Car05g03253 1158 Pfam Leucine Rich repeat 688 704 IPR001611 GO:0005515
Car05g03253 1158 Gene3D Ribonuclease Inhibitor 419 493 IPR032675 -
Car05g03253 1158 Gene3D Ribonuclease Inhibitor 494 767 IPR032675 -
Car05g03253 1158 MobiDBLite consensus disorder prediction 808 826 - -
Car05g03253 1158 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 7 1153 - -
Car05g03253 1158 ProSitePatterns Serine/Threonine protein kinases active-site signature. 977 989 IPR008271 GO:0004672|GO:0006468
Car05g03253 1158 SUPERFAMILY Protein kinase-like (PK-like) 834 1144 IPR011009 -
Car05g03253 1158 MobiDBLite consensus disorder prediction 805 832 - -
Car05g03253 1158 ProSiteProfiles Protein kinase domain profile. 854 1152 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g03253 1158 PRINTS Leucine-rich repeat signature 450 463 - -
Car05g03253 1158 PRINTS Leucine-rich repeat signature 688 701 - -
Car05g03253 1158 SMART serkin_6 854 1134 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g03253 1158 Gene3D Phosphorylase Kinase; domain 1 830 932 - -
Car05g03253 1158 Pfam Protein kinase domain 856 1105 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g03253 1158 SUPERFAMILY L domain-like 340 733 - -
Car05g03253 1158 Gene3D Ribonuclease Inhibitor 36 193 IPR032675 -
Car05g03253 1158 Gene3D Transferase(Phosphotransferase) domain 1 933 1145 - -
Car05g03253 1158 SMART LRR_typ_2 351 375 IPR003591 -
Car05g03253 1158 SMART LRR_typ_2 447 470 IPR003591 -
Car05g03253 1158 SMART LRR_typ_2 102 126 IPR003591 -
Car05g03253 1158 SMART LRR_typ_2 423 446 IPR003591 -
Car05g03253 1158 SMART LRR_typ_2 471 495 IPR003591 -
Car05g03253 1158 SMART LRR_typ_2 220 244 IPR003591 -
Car05g03253 1158 SMART LRR_typ_2 543 566 IPR003591 -
Car05g03253 1158 SMART LRR_typ_2 268 291 IPR003591 -
Car05g03253 1158 SMART LRR_typ_2 688 712 IPR003591 -
Car05g03253 1158 SMART LRR_typ_2 150 174 IPR003591 -
Car05g03253 1158 SMART LRR_typ_2 591 615 IPR003591 -
Car05g03253 1158 SMART LRR_typ_2 640 664 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03253 Car-Chr5 77264816 77268500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03253 6 1158 Receptor kinase-like Gene Family AT1G75640 61.179 0.0 1302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Car05g03253 Pkinase 1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03253 - - gmx:100801571 1556.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03253 05 77264816 77268500 Car05g03253 05 77264816 77268500 ECH