Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03246 ATGGCTCGTGGAAAGATCCAGATCAAGAGGATTGAGAACACGACAAATCGACAGGTCACTTATTCAAAACGAAGAAATGGTCTTTTCAAGAAGGCTAATGAACTCACTGTTCTTTGTGATGCTAAGGTTTCTATTATTATGTTTTCAAGCACCGGTAAACTTCATGAGTACATTAGCCCTTCCATCTCAAGTAAGCAGTTTTTCGATCTGTATCAGATGACGGTTGGAACTGATCTATGGACCTCTCATTATGAGAATATGCAAGAGCACTTGAAGAAACTGAAAGATGTGAATAGGAATCTTCGCAAGGAGATTAGGCAGAGGATGGGAGATTGTCTGAACGATCTGAGTATGGAAGAGTTGAGGCTACTTGAGGAAGAAATGGACAAGGCCGTCAAGGTTATTCGTGAGAAAAAGTATAAGGGGATAACATCTCAGATTGACACTCACAGGAAGAAGTTTAATAACGAGAGAGAGGTGCACAACAGACTCCTGCATGACTTGGATGCAAGAGGGGAAGATCCACGATATGAATTGATGGACAAAGGAGGGGAGTATGAGTCAGTGATCGGTTTCTCAAATTTAGGACCACGCATGTTTGCATTGACCTTACAACCTACTCATCCTAATGCCCATAGTGGAGGAGCTGGAGCATCTGCCTCTGATCTCACTACTTACCCTTTACTTTTCTAG 693 0.4228 MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSISSKQFFDLYQMTVGTDLWTSHYENMQEHLKKLKDVNRNLRKEIRQRMGDCLNDLSMEELRLLEEEMDKAVKVIREKKYKGITSQIDTHRKKFNNEREVHNRLLHDLDARGEDPRYELMDKGGEYESVIGFSNLGPRMFALTLQPTHPNAHSGGAGASASDLTTYPLLF 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03246 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Car05g03246 230 ProSiteProfiles K-box domain profile. 84 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car05g03246 230 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Car05g03246 230 Pfam K-box region 81 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Car05g03246 230 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 227 - -
Car05g03246 230 Gene3D - 13 75 IPR036879 GO:0003677|GO:0046983
Car05g03246 230 Coils Coil 84 107 - -
Car05g03246 230 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Car05g03246 230 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car05g03246 230 PANTHER APETALA3 1 227 - -
Car05g03246 230 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Car05g03246 230 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Car05g03246 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car05g03246 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car05g03246 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Car05g03246 230 Coils Coil 121 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03246 Car-Chr5 77225285 77228247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03246 1 229 MADS-box Gene Family AT3G54340 55.365 3.22e-92 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Car05g03246 K-box 9.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03246 K09264 - gmx:547720 383.259
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03246 05 77225285 77228247 Car05g03246 05 77225285 77228247 ECH