Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03233 ATGTATCCCAACCAAGCATTCTCTTCAGGATCCTATGCAGATATGTACACCGTGACTCCTCTATTACCTCATAACTGCTACAATGAATCATTAGGAGAACAAAATGAAGCCATCACAACTATGCAATCCATTGATGAACATTCCAATGCTTGCAACTCTCATGTAGATAGTGACCAAAATATACATCAGTGTCATGGTTTATCTCTTAGTCTAGGGACACTGTTGCCTTCTACCGCATCTGTTTCTCCATTTCAATATCAGTATCACGACACTGGTTTTGTGACGTTAATGAATGCTTGTCTTCCAAACTTAAATGGAACTAGTACTACTTTATCCAGAGATGATGATGACAACATGCATAAGGAGTTGGAAAGTGCTGAATGTATGCCAACCTTTCATCATGAAATTACCAAAAGGGAAGGTTTTCGCACTCTTCACCCCTCAGATCAATGCTTTCAGGGATCACAAGGTTTTTCTAATATTTTTCTAAACTCACAATATCTTAAGGCTACACAGGAGTTACTTGATGAGATAGTTAATGTAAGAAAGGCTTTGAAGCAGCATGGAATGGAAAAACAAGAAAAAACCAGTGACATTGGATTAGATAACTCTAAAGATGCTGATGGAAAAGAAACCAGTCATTCTATGCAAATGTCTTCAGGTCCTAATGGTGATAATTCCAATTCTTGTTGTGAATTATCCCCAGCTGAACGGCAGAATTTGTTGGATAAGAAGACTAAGCTTTTGTCCATGTTGGATGAGGTAGATAAAAGATACAGACAGTACTGTCATCATATGCAGACAGTGGTATCATCTTTAGATATGGTTGCTGGGTGTGGAGCAGCAGAACCATATACTTCACTTGCACTGCGAACAATTTCACGCCATTTTCGCTGCTTGCGCGATGCTATCAGCAGCCAAATTCAAGTGATTCAAAGGAACCTTGGGGAACAAGAAGGAATACCTCGTCTCCGGTATGTTGATCAACATCTTAGACAACAAAAGGCACTTCAACATCTTGGTGTTATGCGACAAGCTTGGAGGCCTCAGAGAGGACTTCCCGAAAACTCTGTTTCAATACTTCGCGCTTGGCTCTTTGAGCATTTTCTTAATCCTTATCCTAAGGATTCAGAGAAAATTATGCTAGCTAGGCAAACTGGTTTAACCAGAAATCAGGTGGCAAATTGGTTCATCAATGCACGTGTACGTCTTTGGAAACCAATGGTTGAGGAAATATACAAAGAAGAGTTTAGTGATTCTAAAAGAGATTGCGTTCAAGAGTTTGataataataataaatcagaagagtcacatgaaaacaatgtaattacaagtgataataatactaataTCCAAGCTGGACAATTTCATGGGTTGAAGTCAGAACAAACCTCTTGCACTACAGAACAATATGGAGAGAAAAGAATGCAGGGTAATCAAAGGTTGAGCGCGAAAAATGGCTTTTATTCAAGTAGTGGTGGCACACAAATAGCTTCTGATTCTGCCACATATGAATTATCAGAGTTGGGTAACTTTTCTTCTGTGGGTGGCCACCACCACGTTTCTCTTGCATTGGAGTTGAGGAACTGTGAAAGCGATGTATTAGCTATATCCGATGATGCCATACAAAAAAGACATAATAATCATAATCAGACATTGGCTTCTTCTTCAGACTCTGATTTACTAGATTATCATTTTACAGATTCTGGAAAGCAACAACACAGGTTTGGCAATACTCATCTGTTGCATGAGTTTGTCGTATGA 1764 0.381 MYPNQAFSSGSYADMYTVTPLLPHNCYNESLGEQNEAITTMQSIDEHSNACNSHVDSDQNIHQCHGLSLSLGTLLPSTASVSPFQYQYHDTGFVTLMNACLPNLNGTSTTLSRDDDDNMHKELESAECMPTFHHEITKREGFRTLHPSDQCFQGSQGFSNIFLNSQYLKATQELLDEIVNVRKALKQHGMEKQEKTSDIGLDNSKDADGKETSHSMQMSSGPNGDNSNSCCELSPAERQNLLDKKTKLLSMLDEVDKRYRQYCHHMQTVVSSLDMVAGCGAAEPYTSLALRTISRHFRCLRDAISSQIQVIQRNLGEQEGIPRLRYVDQHLRQQKALQHLGVMRQAWRPQRGLPENSVSILRAWLFEHFLNPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEIYKEEFSDSKRDCVQEFDNNNKSEESHENNVITSDNNTNIQAGQFHGLKSEQTSCTTEQYGEKRMQGNQRLSAKNGFYSSSGGTQIASDSATYELSELGNFSSVGGHHHVSLALELRNCESDVLAISDDAIQKRHNNHNQTLASSSDSDLLDYHFTDSGKQQHRFGNTHLLHEFVV 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03233 587 Pfam Associated with HOX 163 305 IPR006563 -
Car05g03233 587 MobiDBLite consensus disorder prediction 186 232 - -
Car05g03233 587 MobiDBLite consensus disorder prediction 186 212 - -
Car05g03233 587 SMART prehox3 156 306 IPR006563 -
Car05g03233 587 Gene3D - 344 421 - -
Car05g03233 587 SMART HOX_1 347 411 IPR001356 GO:0003677
Car05g03233 587 ProSiteProfiles 'Homeobox' domain profile. 344 407 IPR001356 GO:0003677
Car05g03233 587 CDD homeodomain 347 408 IPR001356 GO:0003677
Car05g03233 587 SUPERFAMILY Homeodomain-like 348 413 IPR009057 -
Car05g03233 587 Pfam Homeobox KN domain 364 403 IPR008422 GO:0003677|GO:0006355
Car05g03233 587 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 31 546 - -
Car05g03233 587 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 31 546 - -
Car05g03233 587 MobiDBLite consensus disorder prediction 213 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03233 Car-Chr5 77079574 77084130 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03233 157 587 Homeobox Transcription Factor Family AT2G16400 45.516 6.41e-112 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Car05g03233 POX 4e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03233 - - gmx:100807409 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03233 05 77079574 77084130 Car05g03233 05 77079574 77084130 ECH