Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03186 ATGGCGGAACCTCAGAAAAATTCTTCACCGTCACCGTCACCGTCCAAAAAGAAGCGAAGCCTCCCTGGAATGCCAGATCCAGATGCTGAGGTGATTGCTTTATCCCCACAAACTTTATTAGCGACGAACCGTTTCATATGCGAGATCTGCAACAAAGGATTCCAACGGGAACAGAATCTGCAACTTCACCGGCGGGGACACAACTTGCCGTGGAAGCTTCGGCAGCGAGCGAGCGAGGAAATACGCAAGAAAGTGTACGTGTGTCCCGAAACTTCATGTGTTCACCACAATCCTTCAAGAGCGTTAGGCGACCTCACCGGCGTGAAAAAGCACTTTTGTAGAAAGCACGGCGAGAAGAAATGGAAATGTGAACGATGTTCGAAAAATTACGCCGTGAAGTCTGATTGGAAAGCACACATGAAGAGCTGTGGAACTAGAGAGTATAAATGTGACTGCGGCACcttgttctctagGAGGGATAGTTTCATGACGCACAGAGCGTTTTGCGATGTATTGGGGAATGAAAGTGGAAAGGGAGGTAGCAATTTTGTCGCTGTGACTTCGTCTTCTTCGTCACAACCAACGCCTCCACTTACTCCATCAAAATCTTCTGTGCTGTCTACTACTGCTAATTTGTCTATTCAGAGCTCAGATACTGCAGAAAACCAAACAAGGTTGTCGCCGCCATCTTCAAATGCTTCCAATTCTACTAGTTGTTGTTCCACATTCAGCAATCTCATGTCAAGTTTGGCTCACTCTGATTGCCCCACAACTTTCTCTATCACGGAACCAACAACCCTCTCACTTTCCACACCACTCTATCTCTCCAACAACAACAACAAAGATTACCTTCTTCCCCACTATCCTCCACAACCTGCATTATCTGCCACTGCATTACTCCAAAAAGCAGCTGAAATGGGTTCATCCAATTCTTCCTTGCTTCTGGCTTTAGGCTTGAAAGACAATAGTACTGTCAGTATTAGTAGCACTACAACAGTCCAATGGAATGGCCATGTTAAACAAGAGAACGAGCTGGTGGCAAATAACTTTGGGCTTGGACTTCCCTATTCGAATGGGATGATGGGCTCAACAGGCCAGCCCATGACCCGTGATCTTCTTGGTCTAAGCATTGGATTAGGTAGAGGGGATGATCTTTCTTCATTGCTCACATCTTTTGGAGGGAACATTGGTTCAACTGAAGAGGGCTAA 1209 0.4582 MAEPQKNSSPSPSPSKKKRSLPGMPDPDAEVIALSPQTLLATNRFICEICNKGFQREQNLQLHRRGHNLPWKLRQRASEEIRKKVYVCPETSCVHHNPSRALGDLTGVKKHFCRKHGEKKWKCERCSKNYAVKSDWKAHMKSCGTREYKCDCGTLFSRRDSFMTHRAFCDVLGNESGKGGSNFVAVTSSSSSQPTPPLTPSKSSVLSTTANLSIQSSDTAENQTRLSPPSSNASNSTSCCSTFSNLMSSLAHSDCPTTFSITEPTTLSLSTPLYLSNNNNKDYLLPHYPPQPALSATALLQKAAEMGSSNSSLLLALGLKDNSTVSISSTTTVQWNGHVKQENELVANNFGLGLPYSNGMMGSTGQPMTRDLLGLSIGLGRGDDLSSLLTSFGGNIGSTEEG 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03186 402 MobiDBLite consensus disorder prediction 183 236 - -
Car05g03186 402 ProSiteProfiles Zinc finger C2H2 type domain profile. 45 67 IPR013087 -
Car05g03186 402 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 12 393 - -
Car05g03186 402 SMART c2h2final6 121 141 IPR013087 -
Car05g03186 402 SMART c2h2final6 45 67 IPR013087 -
Car05g03186 402 SMART c2h2final6 86 116 IPR013087 -
Car05g03186 402 Gene3D Classic Zinc Finger 25 95 - -
Car05g03186 402 MobiDBLite consensus disorder prediction 1 16 - -
Car05g03186 402 SUPERFAMILY beta-beta-alpha zinc fingers 44 141 IPR036236 -
Car05g03186 402 Gene3D Classic Zinc Finger 108 181 - -
Car05g03186 402 ProSitePatterns Zinc finger C2H2 type domain signature. 47 67 IPR013087 -
Car05g03186 402 MobiDBLite consensus disorder prediction 1 28 - -
Car05g03186 402 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 12 393 - -
Car05g03186 402 Pfam Zinc-finger double-stranded RNA-binding 45 67 IPR022755 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03186 Car-Chr5 76732192 76736039 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03186 7 397 IDZ Gene Family AT3G50700 47.100 6.57e-120 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car05g03186 zf-C2H2_jaz 2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03186 K25869 - gmx:100818095 456.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03186 05 76732192 76736039 Car05g03186 05 76732192 76736039 ECH