Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03171 ATGATCTCAATCACAAATCACCCACTTCTAATCCTTTTATTAATCTTTCTCCCAATAATCAAAGGTCAAGTAAATTACCAGAAATGCCACCAATCATGCGGTTCAACCAAACCCTTCCCTTACCCTTTCGGTTTCTCTTCCGGTTGTTCAATTCGCTTAAACTGCACTCCCGACGGCGAAATCTTCATCGGCGAATTTCCAGTTCAATCGGTAAACTCAAACAGCATAACAGTAAACATCAAAGCACAATGCAATCGTCCATTTGAAAAATTCCACCAACTCTTCAGCCACAAATACGCACCAACTTCGGGTAACGTGATTCTCTTACAGAACTGTACAGAAACTCTAATACCGTGTTCGATACCGGAGGCCCTGCTTCCGAGTCACTTTGAATCTCAATCTAACGGTTGCGGCGGCGGCGGCGGTAAATTGAGTTGCTACTTTGAAAACAACACGAGAAGTTTTGTGAATGAGAAAAAATTGGATCGAATTGGATGTGAATTCTTCATGTCGTCGATTTCGTCTGAAGATTTGACAAATAATTCGGATGCGGCGGTTTCTTTGGAAGTAGCTACGATTGAGCTTGGATGGTGGATTCATGGAGATCAGTGTCTTTGTTCTGATCATGCTAATTGTACTCAAATTGAATCGCCGATTGATGGAAAGCCTGGGTTTCGGTGTAGCTGTAATGATGGGTTCGTCGGCGATGGTTTTTTGGCCGGAGTAGGCTGCCGGAAAGCCTCATCAACATGCAACCCAAAAAAATACATGTCCGGAAGATGTGGAGGAACAGCAAGATTTATTGTCTTAATTGGAGGATTTGTTTTGGGTGCTTCACTGATGGTTACTCTAGGTTCAGTATGTTGTTTCTTTCGCCGACGCACCAAATTAAGAGTCACAAAGAGCACAAAAAGACGCTTCACCGAAACTACTAACAATTACAGTGTGCCTATCTATTCCTACAAAGACATTGAGAGAGCCACACATAGTTTCTCAGAGAAACAAAGGTTAGGAACCGGAGCATACGGTACGGTTTATGCTGGGAAACTTTACAACGATGAATATGTTGCTATCAAAAGAATAAAACACAGAGACAATGAAAGCATTGAACAAGTCATGAATGAGATCAAGCTCATTTCCTCTGTTAGCCACCCCAATTTAGTACGCTTATTGGGTTGTTCCATTGAGTATGGAGAGCAAATTTTGGTGTATGAGTTCATGCCAAATGGAACATTGAGTCAGCATTTGCAAAGAGAGAGAGGAAACGGGCTTTCATGGCCTGTTAGACTCAAAATTGCCACAGAAACAGCCCAAGCCATATCACATCTTCATTCAGAAATTAATCCACCTATTTACCATAGAGATATCAAATCAAGTAACATACTTTTGGACAACAATTTTGGTTCCAAAGTAGCAGATTTTGGGCTATCAAGATTAGGAATATTAACTGAAATATCTCATGTTTCAACTGCACCACAAGGAACACCTGGCTATGTTGACCCACAATACCATCAAGACTTTCACCTTTCAGATAAAAGCGATGTATATAGCTTTGGTGTGGTTCTTGTTGAGATCATTACAGGACTAAAAGTAGTTGACTTTTCACGTCCTCATAATGAAGTGAATTTGGCTTCTCTTTTTATTGATAAGATCAGAAAAGGGCTTTTGGTTGATATTATAGACCCAATATTTCTTGATCCCCAAGTAACCAATGATGAGTGGACACTTTCTTCTATACACAAAGTTGCTGAGGTGGCATTTACATGCCTTGCATTTCATAGGGATATGAGACCTTGTATGACAGAAGTGGCAACTGAATTAGAGCAACTAAGGTTGAGTAAGTGGAAATCTGTTGATGAAAACAATTGTTTTGTTTCAATAGAGTTGTCTTCTTGCTCTTCTTCTTCTAGTGAAAGTGAGAAACCATTGAGCAATACCACATTGAAGAACGTTGGGCCTAAGGGTAAAGGCCTTATTAAGCTGGATACTGGGCCTGTTTCTTTGAAGTCAGTTGATAGGCTCAATAGTAGCTCGCCGGTTTCGGTACAAGACCCAGACCCGTGGTTTAGTCAGCAGAGCTCGCCCTCCAATAGTTTTCCCAGTAAGATATTTGATCATGGATCTGTTTCATGA 2133 0.4083 MISITNHPLLILLLIFLPIIKGQVNYQKCHQSCGSTKPFPYPFGFSSGCSIRLNCTPDGEIFIGEFPVQSVNSNSITVNIKAQCNRPFEKFHQLFSHKYAPTSGNVILLQNCTETLIPCSIPEALLPSHFESQSNGCGGGGGKLSCYFENNTRSFVNEKKLDRIGCEFFMSSISSEDLTNNSDAAVSLEVATIELGWWIHGDQCLCSDHANCTQIESPIDGKPGFRCSCNDGFVGDGFLAGVGCRKASSTCNPKKYMSGRCGGTARFIVLIGGFVLGASLMVTLGSVCCFFRRRTKLRVTKSTKRRFTETTNNYSVPIYSYKDIERATHSFSEKQRLGTGAYGTVYAGKLYNDEYVAIKRIKHRDNESIEQVMNEIKLISSVSHPNLVRLLGCSIEYGEQILVYEFMPNGTLSQHLQRERGNGLSWPVRLKIATETAQAISHLHSEINPPIYHRDIKSSNILLDNNFGSKVADFGLSRLGILTEISHVSTAPQGTPGYVDPQYHQDFHLSDKSDVYSFGVVLVEIITGLKVVDFSRPHNEVNLASLFIDKIRKGLLVDIIDPIFLDPQVTNDEWTLSSIHKVAEVAFTCLAFHRDMRPCMTEVATELEQLRLSKWKSVDENNCFVSIELSSCSSSSSESEKPLSNTTLKNVGPKGKGLIKLDTGPVSLKSVDRLNSSSPVSVQDPDPWFSQQSSPSNSFPSKIFDHGSVS 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03171 710 ProSitePatterns Serine/Threonine protein kinases active-site signature. 451 463 IPR008271 GO:0004672|GO:0006468
Car05g03171 710 ProSiteProfiles Protein kinase domain profile. 331 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car05g03171 710 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 21 649 IPR045274 GO:0007166
Car05g03171 710 SUPERFAMILY Protein kinase-like (PK-like) 306 608 IPR011009 -
Car05g03171 710 ProSitePatterns Protein kinases ATP-binding region signature. 337 359 IPR017441 GO:0005524
Car05g03171 710 MobiDBLite consensus disorder prediction 670 710 - -
Car05g03171 710 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 14 21 649 - -
Car05g03171 710 Pfam Protein tyrosine and serine/threonine kinase 334 528 IPR001245 GO:0004672|GO:0006468
Car05g03171 710 Gene3D Laminin 205 239 - -
Car05g03171 710 Gene3D Transferase(Phosphotransferase) domain 1 407 631 - -
Car05g03171 710 Gene3D Phosphorylase Kinase; domain 1 292 406 - -
Car05g03171 710 SMART serkin_6 331 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03171 Car-Chr5 76606720 76612554 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03171 10 696 Receptor kinase-like Gene Family AT2G23450 51.778 0.0 651
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Car05g03171 PK_Tyr_Ser-Thr 1.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03171 - - mtr:MTR_3g111510 1175.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03171 05 76606720 76612554 Car05g03171 05 76606720 76612554 ECH