Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03167 ATGATTTGTAGATTTCTTTGCAATAAAAAGAAAAAAAAGGAAGAAGGATCCACCATGTCCTCCCCAGCCGTACGGTTGCACATCCAAAATCACTATGTGGTGATGGATAATGGCATAGTCCAAGTTACTTTATCAAAACCAGATGGAATTGTTACTGGAATAAAATACAATGGTGTTGACAATTTGCTTGAAGTTCTCAATAAGGAGCCCAATAGAGGGTACTGGGATCTTGTTTGGAGTGCACCAGGAAGCAAAGGAATCTTCGATGTGATTAAAGGAACGTGTTTCAAAGTTATAGTTCAAAATGAGGACCAGGTGGAGCTTTCGTTCAAAAAAATGTGGGATCCTTCTCTTGAGGGAAAGTTTGTCCCCTTAAATATTGACAAAAGATTCATTATGCTCCGTGGTTCATCGGGCTTCTACTCTTATGGAATTTATGAGCACTTAAGAGGATGGCCAGATTTTGATCTTAGCGAAACGAGGATCACTTTCAAGCTTAGAAAAGACAAGTTTCAGTACATGGCTGTGGCAGACGATAGGCGAAGGATTATGCCTTTTCCAGAGGATCGGTTACCGGGAAGATGCCAACCTTTGGCCTACCAAGAAGCTGTCCTACTAGTCAATCCTAAGGATCCACGATTAAAAGGAGAGGTGGATGACAAGTATCAATACTCATGTAAAAACATAGACAATCGAGTCCATGGGTGGATATCTTTCAATCCACATGTAGGATTCTGGCAGATCACACCTAGTGATGAGTTTCGTTCTGGTGGACCCCTCAAGCAGAATTTGACCTCACATGTTGGACCTACCACACTGGCCATGTTTCTTAGTGGTCACTATGCTGGACAAGATTTGGTACCCAAATTTAGAGGCGGTGAACCATGGAAAAAGGTTTTTGGTCCCGTATATATTTATCTCAATTCCGGGTCAACCGGTGATGACCCGCTCTTGCTATGGGAGGATGCAAAAATACAGATGATGAGAGAGGTTCAAAGTTGGCCATATTCATTCCCCGCTTCAGAGGATTTTTTAAAATCAGATCAACGAGGCAGTGTCTGTGGCAAATTATTTGTCTTAGACAGGTACATCAGCCCTGACGTAATACCAGCAAATGGTGCTTATGTTGGTCTTGCTCCACCAGGAGATGCAGGATCATGGCAAAGAGAATGCAAGGACTATCAATTCTGGACCAGAGCAGACGAGAATGGAAATTTTACGATTAGCAATGTACGTCCAGGTGACTACAACCTTTTTGCCTGGGTGCCTGGTTTTGTTGGAGATTACAACAAATTTGGTGATATTATGAAGATAACCTCAGGTTCTTACATGGAATTGGGTCAATGTATATATAAACCTCCCAGGGATGGCCCCACATTGTGGGAAATAGGTATTCCTGATAGATTGGCCGCAGAATTTTATGTTCCTGATCCGAATCCACAGCATATTAATAAGCTTTTTATCAACCATCCAGACAGGTTCAGGCAGTATGGATTGTGGGACAGATATTCAGAATTATATCCTGATGCAGATTTGGTTTATACAATTGGTGTTAGTGACTACAGGAAGGATTGGTTTTTCGCTCAGGTTCCCAGGTCTGATTCTTGGAATATTGATTATTTGTATAACATGGCTGAAGACCATAACGCCTACTTCATCTTAAATAGATTTCTTTTGAGTTAA 1683 0.4147 MICRFLCNKKKKKEEGSTMSSPAVRLHIQNHYVVMDNGIVQVTLSKPDGIVTGIKYNGVDNLLEVLNKEPNRGYWDLVWSAPGSKGIFDVIKGTCFKVIVQNEDQVELSFKKMWDPSLEGKFVPLNIDKRFIMLRGSSGFYSYGIYEHLRGWPDFDLSETRITFKLRKDKFQYMAVADDRRRIMPFPEDRLPGRCQPLAYQEAVLLVNPKDPRLKGEVDDKYQYSCKNIDNRVHGWISFNPHVGFWQITPSDEFRSGGPLKQNLTSHVGPTTLAMFLSGHYAGQDLVPKFRGGEPWKKVFGPVYIYLNSGSTGDDPLLLWEDAKIQMMREVQSWPYSFPASEDFLKSDQRGSVCGKLFVLDRYISPDVIPANGAYVGLAPPGDAGSWQRECKDYQFWTRADENGNFTISNVRPGDYNLFAWVPGFVGDYNKFGDIMKITSGSYMELGQCIYKPPRDGPTLWEIGIPDRLAAEFYVPDPNPQHINKLFINHPDRFRQYGLWDRYSELYPDADLVYTIGVSDYRKDWFFAQVPRSDSWNIDYLYNMAEDHNAYFILNRFLLS 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03167 560 Gene3D - 347 443 - -
Car05g03167 560 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 8 535 - -
Car05g03167 560 CDD RGL4_M 349 447 IPR029413 -
Car05g03167 560 Gene3D - 26 323 IPR014718 GO:0030246
Car05g03167 560 SUPERFAMILY Starch-binding domain-like 348 426 IPR013784 GO:0030246
Car05g03167 560 Pfam Polysaccharide lyase family 4, domain II 372 443 IPR029413 -
Car05g03167 560 SUPERFAMILY Galactose mutarotase-like 31 314 IPR011013 GO:0003824|GO:0005975|GO:0030246
Car05g03167 560 CDD RGL4_N 24 315 - -
Car05g03167 560 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 8 535 - -
Car05g03167 560 Pfam Rhamnogalacturonate lyase family 13 218 IPR010325 -
Car05g03167 560 SUPERFAMILY Galactose-binding domain-like 456 544 IPR008979 -
Car05g03167 560 Pfam Polysaccharide lyase family 4, domain III 459 546 IPR029411 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03167 Car-Chr5 76582162 76594037 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03167 19 532 Polysaccharide Lyase AT1G09910 70.817 0.0 790