Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03166 ATGTCGTCGCTAGGGGTGCAACTCAGCATTCAAGATCATCATGTTGTGATGGACAATGGCATACTAAGAGTCACTTTATCAAATCCTGAGGGAATTGTTACTGGAATACAGTATAATGGCATTGACAACTTGCTTGAAGTTTTGAATGATGAATCTAATAGAGGGTATTGGGACCTTGTTTGGAGCTCACCAACAAGTACAGGAACCACGGGAAATTTTGATGTGATAAAGGGAAGCACGTTCAAAGTTATATTGGAAGATGAGGATCAAGTTGAGTTATCCTTCACCAGGACATGGGATGCCTCCATGGAGGGCAAGTTGGTTCCTTTAAATATTGATAAAAGGTTTATAATGCTCAGTGGTTGTTCCGGCTTCTACACCTATGCAATCTATGAGCACTTGGAGGACTGGCCTGCTTTCAATCTTGATGAAACAAGAATTGCTTTCAAGCTTAGAAAAGACAAGTTCCATTATATGGCAATGGCAGATAATAGACAAAGGAATATGCCTCTTCCAGATGACAGAGTACCACCAAGAGGACAAGCACTTGCTTATCCAGAAGCAGTTCTACTTGTCAATCCTATTGAGCCAGAACTTAAAGGAGAGGTGGATGACAAATACCAATATTCATGTGATAACAAAGATAGCCAAGTTCATGGATGGATTTCCATGGATCCTGCTGTTGGATTCTGGCTCATTACGCCTAGCAATGAGTTTCGATCTGGTGGACCCGTCAAACAAAACTTAACATCCCACGTCGGACCCACCACACTTGCGGTGTTTCTGAGTGCTCATTATAGTGGACAGGATTTAGTACCTAAGTTCAAAGCTGGTGAGGCATGGAAAAAAGTTTTTGGTCCTGTTTTTATCTATTTGAATTCTCCATATGATGGTGGTGACCCAATTAAGCTATGGGATGATGCTAAACTTCAGATGTTAATGGAAGTTCAAAGCTGGCCCTATAGTTTTCCTGAATCAGATGATTTCCCAAAGTGGGATGAACGTGGTTATGTTAGTGGCAGGTTATTGATTAAAGAGAGGTGTATAGATGATGATGACTATGTATCAGCAAAAGGTGCTTATGTTGGCTTGGCTCCACCAGGAGATGTTGGATCTTGGCAAAGAGAATGCAAGAATTATCAGTTTTGGGCTACAGCAGACTATGATGGCTATTTCTCAATCAGCAACATACATGTCGGTGACTATAATGTTTATGCATGGGTACCTGGTTATATTGGTGACTATAAATATGATGTAGTAATTAGCATAACAGAAGGTTGTGACATAGACATTGGTGATCTTGTATATGAACCTCTAAGAGATGGTCCAACATTGTGGGAAATAGGCATCCCTGATCGTTCAGCCGCTGAGTTTTACGTTCCTGATCCAAATCCTAAATATATCAACAAACTTTATGTTAATCATCCAGACAAGTTTAGGCAATATGGGATATGGGAGAGATATGCAGAATTATACCCTGACAAAGATTTGATTTACACAGTTGGTGTTAGTGACTATACCAAAGATTGGTTCTTTGCTCAAGTTACAAGGAAGAAAGATGATAATACATATCAGGGAACCACATGGCAAATCAAGTTTAAGCTTGATAGTGTCAACAGAAGCAGTACCTATAAACTTCGAGTAGCTTTGGCATCAGCAACATATTCAGAACTTCAGGTACGAGTTAATGACCCAAAAGCAAATCGACCATTATTTTCAAGTGGATTGATAGGAAAGGATAATTCAATTGCTAGGCATGGAATTCATGGACTTAATTGGCTTTATAGTGTGGGCATATCAGGCAATTTACTTGTTGAAGGAGATTATAATACCATATTTTTGACACAAGCAAGAGGTAATGGTCCATTTCAGGCCATTATGTATGATTATATTCGTTTGGAAGGTCCAGCTGCAATTTCTAGTTCCAATAAGAAAATTTGA 1941 0.3941 MSSLGVQLSIQDHHVVMDNGILRVTLSNPEGIVTGIQYNGIDNLLEVLNDESNRGYWDLVWSSPTSTGTTGNFDVIKGSTFKVILEDEDQVELSFTRTWDASMEGKLVPLNIDKRFIMLSGCSGFYTYAIYEHLEDWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRVPPRGQALAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDSQVHGWISMDPAVGFWLITPSNEFRSGGPVKQNLTSHVGPTTLAVFLSAHYSGQDLVPKFKAGEAWKKVFGPVFIYLNSPYDGGDPIKLWDDAKLQMLMEVQSWPYSFPESDDFPKWDERGYVSGRLLIKERCIDDDDYVSAKGAYVGLAPPGDVGSWQRECKNYQFWATADYDGYFSISNIHVGDYNVYAWVPGYIGDYKYDVVISITEGCDIDIGDLVYEPLRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYVNHPDKFRQYGIWERYAELYPDKDLIYTVGVSDYTKDWFFAQVTRKKDDNTYQGTTWQIKFKLDSVNRSSTYKLRVALASATYSELQVRVNDPKANRPLFSSGLIGKDNSIARHGIHGLNWLYSVGISGNLLVEGDYNTIFLTQARGNGPFQAIMYDYIRLEGPAAISSSNKKI 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03166 646 Gene3D - 4 304 IPR014718 GO:0030246
Car05g03166 646 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 638 - -
Car05g03166 646 Pfam Polysaccharide lyase family 4, domain II 358 430 IPR029413 -
Car05g03166 646 CDD RGL4_C 446 634 - -
Car05g03166 646 Gene3D - 333 428 - -
Car05g03166 646 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 638 - -
Car05g03166 646 SUPERFAMILY Galactose-binding domain-like 441 634 IPR008979 -
Car05g03166 646 CDD RGL4_M 334 434 IPR029413 -
Car05g03166 646 SUPERFAMILY Starch-binding domain-like 373 430 IPR013784 GO:0030246
Car05g03166 646 Pfam Polysaccharide lyase family 4, domain III 444 633 IPR029411 -
Car05g03166 646 CDD RGL4_N 8 301 - -
Car05g03166 646 SUPERFAMILY Galactose mutarotase-like 11 294 IPR011013 GO:0003824|GO:0005975|GO:0030246
Car05g03166 646 Pfam Rhamnogalacturonate lyase family 4 203 IPR010325 -
Car05g03166 646 Gene3D - 442 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03166 Car-Chr5 76576119 76581846 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03166 1 637 Polysaccharide Lyase AT1G09890 70.266 0.0 934
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03166 K18195 - gmx:100814721 1204.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03166 05 76576119 76581846 Car05g03166 05 76576119 76581846 ECH