Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03165 ATGAAACAGGGAACAATGGAGTTCGTTAATCTTTTCATGTTCTTAATGTTGCATTTCATCATGGTTCTGAGTAGTAGTAATAGCACTAATTCAGGGGTACGATTGGATATTCAAGAAAAACATGTGATAATGGATAATGGCATAGTCCAAGTAAATTTATCAAATCCTGAAGGATATGTCATTGGAATTCAATATAATGGAATCGACAATTTGCTCGAAGTTGTTAACGACGAATCTAACAGAGGGTATTGGGATATTGTTTGGGACCAGGGAGGGGTAAAAAGAACAAAAAAAGGAGCAAAGGGAAAGGGTAGATTTGACAGGATGGAAGCTACAAATTTTACGGTGATAGTTGAAAATGAAGAACAAGTTGAGCTATCTTTCACTAGAACGTGGAATTTCTCTCTTGAAGGAAAACTTGCACCACTCAATATTGATAAAAGATTTATAATGCTTCGTGGTTCATCTGGATTCTACACGTATGCCATTTACGAGCATTTGAAGGAATGGCCTGCCTTTGATATTGACAATACTAGAGTTGCATTCAAACCTAGGAAAGACAAGTTTAAGTACATGATTATATCGGACGAGAGACAAAGGTTTATGCCTCTGCCTGATGACCGGTTACCGGGAAGAGGTGAAGTTCTTGCTTACCCAGAAGCTGTTCGTCTTGATAATCCAATAGAGCCAGAGTTCAAAGGAGAGGTAGATGATAAGTATGAGTATTCATGTGAGAGTCGAAGTAACAATGTTCATGGTTGGATTTCCACAAATAAATCGGATTCGACTGGAATATGGCTAATTACTCCAAGCTATGAGTTCAGATCTGCTGGGCCCCTAAAGCAATACCTGGGTTCCCACTTGGGTCCCACCATGCTCTCTGTATTTCATAGCACGCATTATTCTGGGACAGATTTGATAATGAAATTTGGACCCAATGAGCCGTGGAAGAAAGTATTTGGGCCCATATTCATATACCTTAATTCCATCTCTAATGGGGTTAGCCCAAAAATGCTCTGGAACAACGCCAAACAACAGACGGCAAATGAAATTGAAAGCTGGCCCTATACATTTCCGGCTTCTAAAGACTTTCTCTCATCTAACCAACGTGGTAAAGTTGAAGGCAGATTCCTTGTCCGAGACAGGTATATCAAGGATGCATTCGTCCCAGTCAGCGGTGGTTATGTGGGATTAGCAGCACCAGGAGATGTTGGATCTTGGCAAAGAGAATGCAAGGGTTATCAATTTTGGACCGTTACTGATGATGAAGGCTATTTCTCAATAACTGACATACTACCTGGTGACTATAATCTTTATTCTTGGGTCAAAGGATTCATCGGTGACTTTCAATATAATTCGACCATTAATATAACCTCAGGTAGTGAAATTAAATTGGGTGAGCTTGTTTACGAGCCTCCAAGAGATGGCCCCACATTGTGGGAAATAGGCATCCCTGATCGCTCAGCTGCAGAGTTTTATATTCCTGATCCAAATCCTCTGTACGTGAATCTGCTTTATCTCAACCAAGACAGGTATAGACAATATGGCTTGTGGGAGAGATATGCTGAATTGTATCCAAATGAAGACCTAGTTTACACTGTTGGCATTAGTGATTACAAAAAAGATTGGTTTTTTGCTCAGCTTAACAGGAAGAAAGACAACAACACTTACCAAGGAACCACATGGCAAATTAATTTCAATCTAGATCAGGTGAATCCCAATGGAATCTACAAATTACGACTGGCTTTGGCATCTGCACATTTTGCACAACTACAGATTCGTATAAACAATTCAAATGCAAATCCACCTATATTTTCAAGTGAAGTTATTGGAAAGGAGAATACTATAGCGAGGCATGGAATTCACGGGTTGTATTGGTTATACAACATTGATGTAAATGGCACTCTTCTTGTGAAAGGGAACAATACCATCTTTTTAACACAAACTAATAACGCAAGTCCTTTTGTAGGAATTTTGTATGATTATATTCGTTTAGAAGGACCTGCTTATGTAAAATTTGAAGATCAAAACTATTCATTGGTAAAATAG 2049 0.3895 MKQGTMEFVNLFMFLMLHFIMVLSSSNSTNSGVRLDIQEKHVIMDNGIVQVNLSNPEGYVIGIQYNGIDNLLEVVNDESNRGYWDIVWDQGGVKRTKKGAKGKGRFDRMEATNFTVIVENEEQVELSFTRTWNFSLEGKLAPLNIDKRFIMLRGSSGFYTYAIYEHLKEWPAFDIDNTRVAFKPRKDKFKYMIISDERQRFMPLPDDRLPGRGEVLAYPEAVRLDNPIEPEFKGEVDDKYEYSCESRSNNVHGWISTNKSDSTGIWLITPSYEFRSAGPLKQYLGSHLGPTMLSVFHSTHYSGTDLIMKFGPNEPWKKVFGPIFIYLNSISNGVSPKMLWNNAKQQTANEIESWPYTFPASKDFLSSNQRGKVEGRFLVRDRYIKDAFVPVSGGYVGLAAPGDVGSWQRECKGYQFWTVTDDEGYFSITDILPGDYNLYSWVKGFIGDFQYNSTINITSGSEIKLGELVYEPPRDGPTLWEIGIPDRSAAEFYIPDPNPLYVNLLYLNQDRYRQYGLWERYAELYPNEDLVYTVGISDYKKDWFFAQLNRKKDNNTYQGTTWQINFNLDQVNPNGIYKLRLALASAHFAQLQIRINNSNANPPIFSSEVIGKENTIARHGIHGLYWLYNIDVNGTLLVKGNNTIFLTQTNNASPFVGILYDYIRLEGPAYVKFEDQNYSLVK 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03165 682 Pfam Polysaccharide lyase family 4, domain II 392 464 IPR029413 -
Car05g03165 682 Gene3D - 366 465 - -
Car05g03165 682 SUPERFAMILY Galactose-binding domain-like 475 666 IPR008979 -
Car05g03165 682 PANTHER RHAMNOGALACTURONATE LYASE B-LIKE PROTEIN 3 667 - -
Car05g03165 682 CDD RGL4_C 480 666 - -
Car05g03165 682 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 3 667 - -
Car05g03165 682 CDD RGL4_M 369 468 IPR029413 -
Car05g03165 682 SUPERFAMILY Starch-binding domain-like 412 465 IPR013784 GO:0030246
Car05g03165 682 Gene3D - 476 666 - -
Car05g03165 682 CDD RGL4_N 41 329 - -
Car05g03165 682 Pfam Polysaccharide lyase family 4, domain III 478 665 IPR029411 -
Car05g03165 682 Pfam Rhamnogalacturonate lyase family 25 236 IPR010325 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03165 Car-Chr5 76565763 76571571 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03165 31 669 Polysaccharide Lyase AT1G09890 62.675 0.0 842
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03165 K18195 - gmx:100786488 1113.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03165 05 76565763 76571571 Car05g03165 05 76565763 76571571 ECH