Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03158 ATGGAGTTCTATGATGAGAATTTCATGGAGGAATTAATGGCTCTAAGAAGAGAAACATATGAAACAAATCCAAGTCAAGAAGAAAATTACCAATTCTTGTCATCAAGTCATAATAATAATAATTTGAGTTTTGACTCTTTTGATCAAAACTCATTTTCTTATTTACCAAATTCTTCTTGTATTCAACAAGTTCCTCAAAGTTTCAACGACATTAATGAATATAGTTACACTTTCAATGAAATCGATGGTTCCTTATTACTTGATGAATCTTCAACCACACCACAAATTCTTGATTCATATTATAATAGTACACTCCTCGACGCTCCATTTATTTCTCAAGAAGATTTTCCATTGTCCATGATTGCAGAAGAGGATCCATGTTTGCTTGGTGAAGAGCTTCAAAATTTGGAGCTTCAAACAACATGCAAAATGGAGCCAACACAATCACCTGAAATGCCGGTTTTCAACACTAGTTCGAGTTCGGAAAGAAAGAATCCATCCAAGAAACTTCAAGGAAAACCATCGAAGAATCTAATGGCCGAGAGAAGAAGAAGAAAGCGATTAAATGATCGACTTTCGATGCTAAGAGCAATTGTCCCTAAGATAAGCAAGATGGACAGAACAGCTATACTTGGAGATACTATTGATTACATGAAAGAGCTTTTGGAGAAAATCAATAATCTGCAACAAGAAATTGAACTAGATTCAAACATGACAAGCTTTATCAATGATGTAAAGCAAAATGAAATCTTGATCAGAAATTCTCCTAAGTTTGAGGTGGAGAGGAGCGGTGACACCCGAGTTGAAATTTGTTGTGCAGGGAAGCCAGGGTTGTTGTTATCCACAGTAAACACACTTGAAGCATTAGGACTTGAGATTCAACAATGTGTTATTAGTTGTTTCAATGATTTCAGAATGCAAGCTTCTTGCTCAGAGGAATTGGAAAGAAGGACAATGTTGAGTTCTGAAGATATTAAGCAAGCCTTATTTAGAAGTGCAGGGTATGGAGGAAGATGTTTGTGA 1023 0.3568 MEFYDENFMEELMALRRETYETNPSQEENYQFLSSSHNNNNLSFDSFDQNSFSYLPNSSCIQQVPQSFNDINEYSYTFNEIDGSLLLDESSTTPQILDSYYNSTLLDAPFISQEDFPLSMIAEEDPCLLGEELQNLELQTTCKMEPTQSPEMPVFNTSSSSERKNPSKKLQGKPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTAILGDTIDYMKELLEKINNLQQEIELDSNMTSFINDVKQNEILIRNSPKFEVERSGDTRVEICCAGKPGLLLSTVNTLEALGLEIQQCVISCFNDFRMQASCSEELERRTMLSSEDIKQALFRSAGYGGRCL 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03158 340 PANTHER DNA BINDING PROTEIN 3 340 - -
Car05g03158 340 SMART finulus 178 227 IPR011598 GO:0046983
Car05g03158 340 MobiDBLite consensus disorder prediction 144 165 - -
Car05g03158 340 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 3 340 - -
Car05g03158 340 Coils Coil 211 238 - -
Car05g03158 340 CDD ACT_UUR-ACR-like 266 304 - -
Car05g03158 340 Gene3D - 163 237 IPR036638 GO:0046983
Car05g03158 340 Pfam Helix-loop-helix DNA-binding domain 178 221 IPR011598 GO:0046983
Car05g03158 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 175 234 IPR036638 GO:0046983
Car05g03158 340 MobiDBLite consensus disorder prediction 144 184 - -
Car05g03158 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 221 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03158 Car-Chr5 76479643 76481619 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03158 155 340 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 64.894 1.63e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car05g03158 HLH 3.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03158 - - cam:101489960 644.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03158 05 76479643 76481619 Car05g03158 05 76479643 76481619 ECH