Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03113 ATGGAAGCTCAAGAGATTTTTCATACCAACTTATTTCCTTCCTCCGACACAGCCACCAATGTTAACACTGCTTCTACCGACCACTTCATCGTTGAAGATCTCTTTGATTTCTCTAATGACGACGTTGCCATTACCGACCCAACTTCTCAATCTCCTCCTACCAACTCCGATTATTCTCCCCCTCTTCAAATCAACCTTGATTCTAATTTTTTAACCCAAAATTCGTCTCCCAAATCTCTCGACGCCCCTTTCTCCGGCGACCTCTCTGTCCCGTATGATGATCTTGCGGAGCTAGAATGGTTATCAAAATTCGCTGAAGAATCATTTTCGAACGACGACCTTCAGAAGCTACAATTAATATCCGGCGTGAAGGCGTCCAAAAACGGCGCATCAAAAACCCATGAAGAGCCCAATATTATATTCAACCCTCAAGTGTCTGTTCCAGCAAAAGCTCGTAGCAAGCGATCACGTGGGCCCCCATGCAATTGGACTTCACGCCTTCTCGTTCTCTCCCCAACTACCACCGCTGAATCTTCTCATTATGACACTATATCCCCACCAAAGAAATCCTCACCGAGAAAGAGGGACACCACTGATGGAGGGGAAGGTCGTAGGTGTCTACATTGTGCAACAGATAAGACGCCGCAATGGCGAACTGGGCCTTTAGGCCCAAAAACACTTTGCAATGCGTGTGGGGTTAGGTACAAGTCGGGTCGACTAGTACCTGAATATAGGCCCGCAGCGAGCCCAACATTTGTGTTAACTAAACACTCCAACTCACATCGTAAGGTAATGGAACTCCGACGCCAAAAGGATGTGATGATGGCCCAACAACAACAATTGTTGCAACTACATCACCATCAGAATATTTTGTTTGATGTACCATCCAACGGTGATGATTACTTGATCCATGAACATGTGGGCCCTGATTTCAGACACCTCTACAGTTAA 951 0.4606 MEAQEIFHTNLFPSSDTATNVNTASTDHFIVEDLFDFSNDDVAITDPTSQSPPTNSDYSPPLQINLDSNFLTQNSSPKSLDAPFSGDLSVPYDDLAELEWLSKFAEESFSNDDLQKLQLISGVKASKNGASKTHEEPNIIFNPQVSVPAKARSKRSRGPPCNWTSRLLVLSPTTTAESSHYDTISPPKKSSPRKRDTTDGGEGRRCLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVMELRRQKDVMMAQQQQLLQLHHHQNILFDVPSNGDDYLIHEHVGPDFRHLYS 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03113 316 PANTHER GATA TRANSCRIPTION FACTOR 1 314 - -
Car05g03113 316 ProSiteProfiles GATA-type zinc finger domain profile. 200 236 IPR000679 GO:0006355|GO:0043565
Car05g03113 316 MobiDBLite consensus disorder prediction 166 186 - -
Car05g03113 316 CDD ZnF_GATA 205 252 IPR000679 GO:0006355|GO:0043565
Car05g03113 316 PANTHER GATA TRANSCRIPTION FACTOR 1 314 - -
Car05g03113 316 PIRSF Txn_fac_GATA_plant 4 294 IPR016679 GO:0003677|GO:0005634|GO:0045893
Car05g03113 316 ProSitePatterns GATA-type zinc finger domain. 206 231 IPR000679 GO:0006355|GO:0043565
Car05g03113 316 Gene3D - 200 250 IPR013088 GO:0006355|GO:0008270
Car05g03113 316 MobiDBLite consensus disorder prediction 187 205 - -
Car05g03113 316 Pfam GATA zinc finger 206 239 IPR000679 GO:0006355|GO:0043565
Car05g03113 316 MobiDBLite consensus disorder prediction 42 61 - -
Car05g03113 316 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 201 264 - -
Car05g03113 316 SMART GATA_3 200 250 IPR000679 GO:0006355|GO:0043565
Car05g03113 316 MobiDBLite consensus disorder prediction 128 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03113 Car-Chr5 75914520 75919975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03113 27 314 C2C2-Gata Transcription Factor Family AT4G32890 50.321 2.19e-93 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Car05g03113 GATA 1.5e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03113 - - gmx:100776588 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03113 05 75914520 75919975 Car05g03113 05 75914520 75919975 ECH