Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03108 ATGGATGAAGTGGGTAATTATTTGAGCAGAGAGGATGAATATGCATTGTCAATTTATCCTAAGGATGTTGTGGATCGATTGAAGAAAATGGTTGCTGATATACATAAAACTTTACAAGAGATTCAAAGTCACTATGTTGTTGATGTCAAAAAGATTGATTTTGATTTGGTGCCTGCGATATCTCAGACACCTTCTCTAAAGAAAACAGCAACACACCATGCTAGTGAATCAAGCAACCAATCTTATCATGAAACTAGGGGTCATCGTTGGACAGAGGATGAGCACAAGTTATTTATTGAGGGATTGGACAAGCATGGAAAGGGTGACTGGAAAAGTATATCAATGCACATGAGAACAAGAACACCTACACAAGTAGCAAGTCATGCTCAGAAATACTTCAATCATTGGAAGTCAATCAATGAGAATAAGAAAAGAAGGCGGCGACCGAGCATACACGATGTCACTCATCTGGAAAATAGAAATACTTCAGCACACCAACGACCAGTTATTGGCCAAACAAGCAATCCAACCCCTGGACACATGGATTATGGTTTTGGGTCTGTTCCTGAGACTGTTATTCCAGAGGCACTAATGAATTTGGGTCCTATGTCATATCCCATGCATCATTCATATACTCTATGA 642 0.3941 MDEVGNYLSREDEYALSIYPKDVVDRLKKMVADIHKTLQEIQSHYVVDVKKIDFDLVPAISQTPSLKKTATHHASESSNQSYHETRGHRWTEDEHKLFIEGLDKHGKGDWKSISMHMRTRTPTQVASHAQKYFNHWKSINENKKRRRRPSIHDVTHLENRNTSAHQRPVIGQTSNPTPGHMDYGFGSVPETVIPEALMNLGPMSYPMHHSYTL 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03108 213 Gene3D - 88 140 - -
Car05g03108 213 ProSiteProfiles Myb-like domain profile. 89 133 IPR001005 -
Car05g03108 213 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 88 135 IPR006447 GO:0003677
Car05g03108 213 CDD SANT 89 133 IPR001005 -
Car05g03108 213 ProSiteProfiles SANT domain profile. 85 140 IPR017884 -
Car05g03108 213 PANTHER TRANSCRIPTION FACTOR SRM1 29 175 - -
Car05g03108 213 SMART sant 86 135 IPR001005 -
Car05g03108 213 MobiDBLite consensus disorder prediction 65 88 - -
Car05g03108 213 PANTHER TRANSCRIPTION FACTOR KUA1 29 175 - -
Car05g03108 213 SUPERFAMILY Homeodomain-like 85 138 IPR009057 -
Car05g03108 213 MobiDBLite consensus disorder prediction 65 81 - -
Car05g03108 213 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 137 IPR017930 -
Car05g03108 213 Pfam Myb-like DNA-binding domain 89 133 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03108 Car-Chr5 75875490 75876632 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Car05g03108 Myb_DNA-binding 6.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03108 - - cam:101496115 446.817