Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03103 ATGAGTAATAACTCAAAAACTAATGAGTGCAGCTCAAATTCAGAACCACAAGCACAAAAGATTAAACGCACCAATAGCACCAGCCATCCAGTTTACCGTGGGGTCCGCATGCGAAACTGGGGGAAATGGGTGTCCGAAATTCGCGAGCCGAGGAAGAAATCGCGAATATGGCTCGGCACATTTTCCACGCCGGAAATGGCGGCTAGAGCTCACGACGTAGCCGCTCTTAGCATAAAAGGAAACGCCGCCATTCTTAACTTCCCTGAGTTGGCTAACTCGCTACCTCGGCCGGCTTCGCTCGCTCCTCGCGATGTTCAAGCCGCCGCAACCAAAGCCGCTCATATGGAATTTCCCTCTTCCACAAATTCTTATGAATTGAGTGAGATCATTGAACTTCCTCGGTTGGGAAACACTGGTGATTTTGAAAAGGAGTTTGTCTTTATAGATTCCATTGATGCTTATCAGCCTCCATGCTTGCACACTATGGAAGATGTTTTTTGGATGGGCTTTATATaa 516 0.4729 MSNNSKTNECSSNSEPQAQKIKRTNSTSHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFSTPEMAARAHDVAALSIKGNAAILNFPELANSLPRPASLAPRDVQAAATKAAHMEFPSSTNSYELSEIIELPRLGNTGDFEKEFVFIDSIDAYQPPCLHTMEDVFWMGFI 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03103 171 Gene3D AP2/ERF domain 31 89 IPR036955 GO:0003700|GO:0006355
Car05g03103 171 ProSiteProfiles AP2/ERF domain profile. 31 88 IPR001471 GO:0003700|GO:0006355
Car05g03103 171 SUPERFAMILY DNA-binding domain 31 89 IPR016177 GO:0003677
Car05g03103 171 CDD AP2 32 90 IPR001471 GO:0003700|GO:0006355
Car05g03103 171 SMART rav1_2 31 94 IPR001471 GO:0003700|GO:0006355
Car05g03103 171 Pfam AP2 domain 30 80 IPR001471 GO:0003700|GO:0006355
Car05g03103 171 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 4 122 - -
Car05g03103 171 MobiDBLite consensus disorder prediction 1 32 - -
Car05g03103 171 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 122 - -
Car05g03103 171 PRINTS Ethylene responsive element binding protein signature 32 43 IPR001471 GO:0003700|GO:0006355
Car05g03103 171 PRINTS Ethylene responsive element binding protein signature 54 70 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03103 Car-Chr5 75808526 75809605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03103 4 170 AP2-EREBP Transcription Factor Family AT5G11590 55.610 3.63e-65 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car05g03103 AP2 3.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03103 K09286 - gmx:100813069 214.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03103 05 75808526 75809605 Car05g03103 05 75808526 75809605 ECH
Car05g03103 05 75808526 75809605 Car04g03011 04 57939839 57940869 PCT