Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03098 ATGTACACACTACTCCACAATAACATGTGTAATAATAACACTTTCTACCCTTATAAGAACCATATTTTTCTAATGCTAATTATGATTCTTTCACTACTATTCAATATTCAAGGCCAAGAAAACAGAGAAAATCAGAACATGGCTGAATTACCACCACAAGGTGTGACACCAAGTAAAGGTGTTGTAATAATTGTTCTTTCCATAATGTTTGTAATAACATTCATTTTACTTCTTTATGTTAAATTCTGTCGTGTTACTCAACTTCAACTTTCAAATCAAAACCCAAGTAATCAACAAAACAATCGATCAAGATCTATAGTTTATGGTGTTGAACAACAAATCATTGAAACACTTCCTTTCTTCAAATTTTCTTCCTTAAAAGGATCAAAACAAGGGTTAGAATGTACCGTTTGTTTGTCGAGATTCGAAGACGAAGAGATTCTTAGATTGTTGCCTAAATGCAAGCATGCTTTTCACATGAATTGCATTGACAAGTGGCTTGAAAGTCACTCTACTTGTCCTCTTTGTAGGTACAAAGTTGAAGAAATGGATATAAAAAATTTCACTTTTTCATTCAGCTCAAGATTTCTTAGAGTCCCTTCAAATTTAAGTGAAGACCCAAATCTTGAAATCTTTATTCAAAGGGAACCGTCACAAAGAAAGAGCAAGAGATTTGAAGAACAAGAAGAATTTCTTCTTGATGATCAAGGAGGTGCAGGAAGCAGTAATGGGGGTGTAACAACAAAGTTGAAACAAAAACAACCTTTGCATATGATTAATCATAAAATATTAATCTCTGATGTCGTTGTTGCAAGGAGTAGGTGGAGTGATCTAAATTCTTCAGATTTGTTATCATTGAATTGTGAGATGCTTCATGATGTGTCAAGCATGAGATTCTCTCAGGAAGAAAATTCAATAATATTTAGTGGTGAAAAGAGGTGTATGTCTGAGATTGCAAATGTTCCAAGGTTTGTGGAAATAAGTAGAAGGAATAGAATGAGAGAATGTGGTGGTGAAGATGGAAGTGGTGAGAGGTTGTGGAGGATTTGGTTGCCAATTGCACGTAGAACAGTTCAATGGTTTGCAAGACAAGAAACAAACTCGGTTCAATTATTACAACATGAACATTTAGCTTCAAACGTTTGA 1146 0.3421 MYTLLHNNMCNNNTFYPYKNHIFLMLIMILSLLFNIQGQENRENQNMAELPPQGVTPSKGVVIIVLSIMFVITFILLLYVKFCRVTQLQLSNQNPSNQQNNRSRSIVYGVEQQIIETLPFFKFSSLKGSKQGLECTVCLSRFEDEEILRLLPKCKHAFHMNCIDKWLESHSTCPLCRYKVEEMDIKNFTFSFSSRFLRVPSNLSEDPNLEIFIQREPSQRKSKRFEEQEEFLLDDQGGAGSSNGGVTTKLKQKQPLHMINHKILISDVVVARSRWSDLNSSDLLSLNCEMLHDVSSMRFSQEENSIIFSGEKRCMSEIANVPRFVEISRRNRMRECGGEDGSGERLWRIWLPIARRTVQWFARQETNSVQLLQHEHLASNV 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03098 381 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 301 375 - -
Car05g03098 381 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 29 303 - -
Car05g03098 381 CDD RING-H2_PA-TM-RING 134 177 - -
Car05g03098 381 PANTHER RING-H2 FINGER PROTEIN ATL4J 301 375 - -
Car05g03098 381 PANTHER RING-H2 FINGER PROTEIN ATL4J 29 303 - -
Car05g03098 381 Pfam Ring finger domain 134 177 IPR001841 -
Car05g03098 381 SUPERFAMILY RING/U-box 115 183 - -
Car05g03098 381 SMART ring_2 135 176 IPR001841 -
Car05g03098 381 ProSiteProfiles Zinc finger RING-type profile. 135 177 IPR001841 -
Car05g03098 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 187 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03098 Car-Chr5 75749638 75751050 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03098 57 365 C3H Transcription Factor Family AT2G20030 39.429 2.36e-66 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03098 K10664 - gmx:100816668 389.037