Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03088 ATGGAGAAGAGCGAAACGACGCTGGATTTAGCTTCGAGGAAATCGGCGAGGCAATTGGATTTCACAGCGGTCCGTGGAGGTCCGACACTCCTGAAACTGTCGCCACCGATGCCACATTCACCGTTGCAGTCGCGTCTTCCGGTGGAGTTGCAATCGGATTTTCAGTCACGAGGACAAGGGCCGTGGTTACATTCACAGCCATGGTGGCTACAGCAGAGAACGTCACAGTCTCCGGTAATGCCGCATTTACTATCACCGCGGTCTCAGTTATCTTCGCCGGTTCTTCGATTACCGCACCCCGCGCAGAAACTTCCGGTGAAGATGTTGCAAGTGGTAAAGCAGGAGTCTCCTAGATCACTGCCTCAAAATAATGCAGGATTAAAGGACAACACTCCAAAGAAACAAAAACAATGTAACTGCAAAAATTCTCGATGCCTTAAATTGTATTGTGAGTGTTTTGCATCTGGGATCTATTGTGATGGTTGCAACTGTCTAAATTGTCATAATAATGTGGACAATGAGGCTGCCCGACAGGAGGCAGTTGGAATAACATTGGAACGCAATCCAAATGCTTTCAGACCAAAAATTGCAAGCAGTCCACAAAAACCACAAGTTTCTATGGAGGAAGTGTCTGAAATTCAAGTAATAGGAAAGCACAATAAAGGATGTCACTGCAAGAAATCAGGTTGCCTTAAGAAGTATTGTGAGTGTTTCCAAGCCAACATCCTCTGCTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAAGGAAGCGACGAACGAAGAGAAGTCTTTCAAGAAGAGTGTAGTCTATTTCACATCAGACAGGCTACTAATGCTGCCATTAGTGGAGCAGTTGGACCCTCCAGCACTGGAACCCATATAACACCCAAGAAGAGAAAAATCCAGGAAATATTTTCTGGCAAATCAGTCATAGGTCAAACTGTTAACACAGCTGCTCAATACCAACAGGAACTTGATCCTTTAGCTTCATCACCTTTATCCCTGTCAGCTTCCTTTGTTTCTGACACTGCCAACACAAGAATTTCAGGGTCTTCAAGATCCACATACAGGTCTGTGTTGGCTGATGTCCTCCAGACACAGAACGTGAAGAATCTTTGTTCACTTTTAGTTGTTCTCTCCAGAGTAGCTGCAAAGACAAATGCAGAAATGAGAGAGAAAGTAGTTAGGAAAATAGAGACTGGTAAATATGAAGCTTCTATTGCTTCATCAGCTCAATTGCTGCAAGACAATAGAGAGGTTGTCAAGCCTGTTTGTCAGGATCATGTAATTATAGAGGAGGCAGATGCAGTTGATATTGACAACCGTAATAGGCCATTGTCACCAGAAACGCTTGCGTTGATGTGTGATGAACAGGATGGGATGTTTTTTGGTAATGGTTCTGCAAATGGAGTTGCAATTGACAACACTAATCAGAATATGATTCAAAAGTCTTCCAATTCTGATGGATGCACTGATGTTTATGAAGAACAGGAAAGGCTTATCCTGACCAAGTTCCGGGATATTCTTTGTGGACTCATTACCCTTGGTAGCATAAAAGAAACAATGTACTCTTCATTAGTGAAGAAAGATGTGGGAATCAAGAAAGAATCTGCAGACAATGGTGATAGGGGCCACTGCTGA 1647 0.4335 MEKSETTLDLASRKSARQLDFTAVRGGPTLLKLSPPMPHSPLQSRLPVELQSDFQSRGQGPWLHSQPWWLQQRTSQSPVMPHLLSPRSQLSSPVLRLPHPAQKLPVKMLQVVKQESPRSLPQNNAGLKDNTPKKQKQCNCKNSRCLKLYCECFASGIYCDGCNCLNCHNNVDNEAARQEAVGITLERNPNAFRPKIASSPQKPQVSMEEVSEIQVIGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSDERREVFQEECSLFHIRQATNAAISGAVGPSSTGTHITPKKRKIQEIFSGKSVIGQTVNTAAQYQQELDPLASSPLSLSASFVSDTANTRISGSSRSTYRSVLADVLQTQNVKNLCSLLVVLSRVAAKTNAEMREKVVRKIETGKYEASIASSAQLLQDNREVVKPVCQDHVIIEEADAVDIDNRNRPLSPETLALMCDEQDGMFFGNGSANGVAIDNTNQNMIQKSSNSDGCTDVYEEQERLILTKFRDILCGLITLGSIKETMYSSLVKKDVGIKKESADNGDRGHC 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03088 548 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 221 255 IPR005172 -
Car05g03088 548 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 135 170 IPR005172 -
Car05g03088 548 MobiDBLite consensus disorder prediction 115 134 - -
Car05g03088 548 SMART CXC_2 133 173 IPR033467 -
Car05g03088 548 SMART CXC_2 218 259 IPR033467 -
Car05g03088 548 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 1 544 - -
Car05g03088 548 PANTHER TESMIN/TSO1-RELATED 1 544 IPR028307 -
Car05g03088 548 ProSiteProfiles CRC domain profile. 134 258 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03088 Car-Chr5 75658772 75664898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03088 10 533 CPP Transcription Factor Family AT4G29000 44.444 1.90e-129 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Car05g03088 TCR 2.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03088 - K21776 gmx:100811459 759.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03088 05 75658772 75664898 Car05g03088 05 75658772 75664898 ECH