Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03048 ATGCAACAGAGGCTAAAGTTGCAGCAACAACAGCAAGCCCTCATGCAGCAAGCTTTGCTTCAACAACAGCAGATGTACCATCACCCTGGCATGCTTGCCGCCGCTGCCATGACTCAGATGGAGCCTGTTCCAAGTGGAAATCTGCCTCCCGGTTTTGATGCTTCTGCATGCCGTAGTGTTTATGTAGGAAATATTCATGTAAATGTCACGGATAAACTTCTCGCAGAAGTTTTTCAGAGTGCCGGTCCTCTTGCTGGGTGCAAGCTCATAAGAAAAGAAAAGTCCTCTTATGGTTTTGTGGACTACCATGATCGAGCATCCGCAGCCCTTGCAATAATGACATTGCATGGACGACAACTATATGGTCAAGCTCTTAAGGTGAACTGGGCATATGCCAATAGCAGTAGGGAGGATACGTCAGGGCACTTCAATGTATTTGTTGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCATGCTTCTCAGTCTATCCTAGTTGTTCTGATGCTAGGGTTATGTGGGATCACAAAACTGGTCGCTCAAAAGGATATGGTTTTGTTTCTTTCCGCGATCATCAGGATGCCCAAAGTGCCATAAATGATATGACAGGTAAATGGCTGGGAAATAGGCAAATAAGATGCAATTGGGCAACTAAAGGAGCTGGTACCAGTTCAATGGAGGAGAAGAACAATGACAACCAAAATGCTGTTGTGCTTACAAATGGATCTTCAGATGGAGGTCAAGATAACAATAATGAGGATGCTCCTGAAAACAATCCTTCATACACCACAGTTTATGTCGGCAACCTTCCCCATGATGTAACACAAGCTGAACTCCATTGTCAATTCCATGCATTGGGGGCTGGGGTACTTGAGGAAGTCAGAGTTCAGAGGGATAAAGGTTTTGGATTTGTCAGATACAATACTCACGAGGAAGCAGCATTGGCCATTCAGATGGCTAATGGAAGACCAGTTCGTGGGAAGACTATGAAGTGTTCATGGGGTAGCAAACCAACGCCTCCTGGGACAGCTTCAAATCCGTTACCTCCTCCTGCTGCACAACCATATCAAATACTTCCTACTGCAGGGATGAACCAAGGCTATTCTCCTGCTGAGTTGTTGGCGTATCAGCGCCAGCTGGCCTTGAGTCAGGCTGCTGTATCCGGCCTTTCAGGACAAGCTCTTCTTCAAATGTCTGGGCAGCATGGCCTAGCTCCTGCTTCAATGGGTATAAACTCTGGGGCATCCCAAGCCATGTATGATGGATATACTGGTAATTCGTCAAGACAGCAGCTTATGTACTATCGTTAA 1317 0.4601 MQQRLKLQQQQQALMQQALLQQQQMYHHPGMLAAAAMTQMEPVPSGNLPPGFDASACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTSGHFNVFVGDLSPEVTDATLFACFSVYPSCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGTSSMEEKNNDNQNAVVLTNGSSDGGQDNNNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALGAGVLEEVRVQRDKGFGFVRYNTHEEAALAIQMANGRPVRGKTMKCSWGSKPTPPGTASNPLPPPAAQPYQILPTAGMNQGYSPAELLAYQRQLALSQAAVSGLSGQALLQMSGQHGLAPASMGINSGASQAMYDGYTGNSSRQQLMYYR 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03048 438 SUPERFAMILY RNA-binding domain, RBD 251 343 IPR035979 GO:0003676
Car05g03048 438 CDD RRM3_TIA1_like 265 339 - -
Car05g03048 438 SMART rrm1_1 144 217 IPR000504 GO:0003723
Car05g03048 438 SMART rrm1_1 266 335 IPR000504 GO:0003723
Car05g03048 438 SMART rrm1_1 59 128 IPR000504 GO:0003723
Car05g03048 438 Gene3D - 1 140 IPR012677 -
Car05g03048 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 145 215 IPR000504 GO:0003723
Car05g03048 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 267 333 IPR000504 GO:0003723
Car05g03048 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 60 126 IPR000504 GO:0003723
Car05g03048 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 265 339 IPR000504 GO:0003723
Car05g03048 438 MobiDBLite consensus disorder prediction 330 350 - -
Car05g03048 438 SMART rrm2_1 144 217 IPR003954 GO:0003676
Car05g03048 438 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 9 435 - -
Car05g03048 438 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 9 435 - -
Car05g03048 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 143 221 IPR000504 GO:0003723
Car05g03048 438 MobiDBLite consensus disorder prediction 223 263 - -
Car05g03048 438 Gene3D - 141 242 IPR012677 -
Car05g03048 438 SUPERFAMILY RNA-binding domain, RBD 137 247 IPR035979 GO:0003676
Car05g03048 438 Gene3D - 243 343 IPR012677 -
Car05g03048 438 SUPERFAMILY RNA-binding domain, RBD 42 136 IPR035979 GO:0003676
Car05g03048 438 CDD RRM2_PUB1 144 218 - -
Car05g03048 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 58 132 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03048 Car-Chr5 75321987 75329188 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03048 59 333 Eukaryotic Initiation Factors Gene Family AT3G16380 27.055 1.73e-18 85.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03048 K13201 - gmx:100777108 806.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03048 05 75321987 75329188 Car05g03048 05 75321987 75329188 ECH