Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03035 ATGGATGAATATTCTGGTAAAAGAGCCACTGATGGGGTGGTAGTCCCTAAAAAGGGTATGGGCAACATGTTTAAAGATACTGCCAATACTAGAGATAGAAATGGTCAAGTATGTAGCCGTCTTGGTTGCAGCAGCAGAGTCAACTCTCCTAAAGGTGCTCAAATCGGTTCTTCTGAAAAGGGTAAATCTTTGAGGCCTTCATTTAGGTACTCTTCAACTGGCAAGGAAACAATTGGAAGCTCCTCTAAAACATTCTCTGGGAGTAGTAACCCAAGAAAACCCCTTAAAAAGCCTCAGAAAACATTACCTATAGAGACAGATTCATCTGAAACTAGTAGTGTACAAGATGAACCAGAAGTTTCGAAGCTAGTACCTCCACCTGAAAAAAATAAGAGGGGGATTCAAGCTGAAGGAGAAAACTCAGAGTCCAGTAATGTCACGCTGATGGAAGTAGGGAGTTCTAGTTTAGCATCTAATACAAGATCTAGGAGGAATTTTCATCCTAAACCTGGATTACGTAGTCAAGAAATTCAAAGTACTGGTCCAGGGACACGTGCTGGTACCAGTAGGTATGGGTTAAGGAACCTAAGATGCAACTCCATCTCTGATGTTATCCCTGCCGGTTGTACACCATCAGATTCAACCCTCAACAGAAGGAAGGATGCTATAAAAAAGAGAAATTGTGACGGGGAAAGTAGTTCTACAGCTAGAGGGAAGAAAATTAACGGGCCCTCGGTAGAAGGGCGGAATTCTGTTTCGAGAAACGGCATATCTATCTCCGATTCAAGAATATCTAGAAATAACCCTCACAGGGACAGACCCGACAGCAATTTAGTGTCTGTTAGAACACGGAGATCAGTTGGTGGTCATGCTAGGGGAAGACTTTCTGGCCAAGGAAATGCTAATCATGTAGCACCTAATCAGTCCCTTATTATGATACCTTCTTTTTCTCATTCTGGCAATCTTAATGCTCCTGGTGTACAACATCATGCTTCTCTAGAGACTCCTTCAAGTCCAAGCTCTTACAGTGGAGCAGGTACTAGCAGTGAGGAGTTATATGGTGTTATGCCGGGGTCTCCTGTTGAATATGGCCTCACTCATTCTCTAATAAATCGGGATGGCTTTCGACGTCGCTACAACATGGATGGTATTGCCGAGGTATTGTTGGCACTTGAGAGGATTGAACAAGATGTTGAGCTTACACACGAGcaaattcttatgttggagtccaacttgttccttactggactaaacttctatgaccagcacagagacatgcggttggacattgataatatgtcttatgaggaactactggctctggaagagaggatgggcactgtgagcaccgctgtaacagaggaAGCTCTATCAGAATGCCTAAAGAGAAGTTTCTATCAATCCTCACCCTCAAACAATGCAGCTAAGAGTTGCAATGAGAATAAGGATGATATCAAATGCAGCATCTGCCAGGAGGAATATGTGGTGGCAGATGAATTAGGGAGTCTACAGTGTGAGCACAAGTATCATTTGGTGTGCATACAGCAGTGGCTACGGCTAAAGAACTGGTGCCCTATTTGCAAAGCATCGGTGGCAACGTCAAGTTCATCCTCATCCCACTAG 1623 0.3937 MDEYSGKRATDGVVVPKKGMGNMFKDTANTRDRNGQVCSRLGCSSRVNSPKGAQIGSSEKGKSLRPSFRYSSTGKETIGSSSKTFSGSSNPRKPLKKPQKTLPIETDSSETSSVQDEPEVSKLVPPPEKNKRGIQAEGENSESSNVTLMEVGSSSLASNTRSRRNFHPKPGLRSQEIQSTGPGTRAGTSRYGLRNLRCNSISDVIPAGCTPSDSTLNRRKDAIKKRNCDGESSSTARGKKINGPSVEGRNSVSRNGISISDSRISRNNPHRDRPDSNLVSVRTRRSVGGHARGRLSGQGNANHVAPNQSLIMIPSFSHSGNLNAPGVQHHASLETPSSPSSYSGAGTSSEELYGVMPGSPVEYGLTHSLINRDGFRRRYNMDGIAEVLLALERIEQDVELTHEQILMLESNLFLTGLNFYDQHRDMRLDIDNMSYEELLALEERMGTVSTAVTEEALSECLKRSFYQSSPSNNAAKSCNENKDDIKCSICQEEYVVADELGSLQCEHKYHLVCIQQWLRLKNWCPICKASVATSSSSSSH 540
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Car05g03035 540 Coils Coil 391 411 - -
Car05g03035 540 MobiDBLite consensus disorder prediction 217 233 - -
Car05g03035 540 Pfam Ring finger domain 486 528 IPR001841 -
Car05g03035 540 SUPERFAMILY RING/U-box 480 533 - -
Car05g03035 540 MobiDBLite consensus disorder prediction 209 301 - -
Car05g03035 540 MobiDBLite consensus disorder prediction 172 186 - -
Car05g03035 540 MobiDBLite consensus disorder prediction 322 348 - -
Car05g03035 540 ProSiteProfiles Zinc finger RING-type profile. 487 528 IPR001841 -
Car05g03035 540 MobiDBLite consensus disorder prediction 1 191 - -
Car05g03035 540 MobiDBLite consensus disorder prediction 27 95 - -
Car05g03035 540 MobiDBLite consensus disorder prediction 234 264 - -
Car05g03035 540 MobiDBLite consensus disorder prediction 102 118 - -
Car05g03035 540 MobiDBLite consensus disorder prediction 122 136 - -
Car05g03035 540 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 532 - -
Car05g03035 540 MobiDBLite consensus disorder prediction 137 165 - -
Car05g03035 540 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 532 IPR045191 GO:0061630
Car05g03035 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 448 534 IPR013083 -
Car05g03035 540 MobiDBLite consensus disorder prediction 265 279 - -
Car05g03035 540 SMART ring_2 487 527 IPR001841 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Car05g03035 Car-Chr5 75210707 75216569 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03035 373 528 C3H Transcription Factor Family AT2G15530 42.949 1.13e-34 137
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03035 - - gmx:100787213 783.867
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car05g03035 05 75210707 75216569 Car05g03035 05 75210707 75216569 ECH
Car04g03100 04 59138098 59140201 Car05g03035 05 75210707 75216569 PCT