Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car05g03021 ATGGAGAAGCGACAAGGGTCATGTGGTCGTGTTGTGATCCCGATGCAAAGGGCAATGGAAGCAATGAATGGATCACAACATGGTTCAAAGATTCTGTATGTAGTCAGAGCACAAAAGAGGGCTGGGCGTGAGCAGATCTCGCACCAGCAATTCGAGGAGAAACGAAAGGAACGAGTCATGGAATATAAGGAGTCAAACATCTATATGAAGAATATCGATGATAATGTTAGTGATCAAGAACTGCGAGATCATTTTAATGCATGTGGCTCTATAACTTCTGCAAAAGTTATGCAAGATTACAATGGGATGATATACAGTGTATATATATCAATTATATATAACAATAGAATAGGAGTTAGTTAA 363 0.3884 MEKRQGSCGRVVIPMQRAMEAMNGSQHGSKILYVVRAQKRAGREQISHQQFEEKRKERVMEYKESNIYMKNIDDNVSDQELRDHFNACGSITSAKVMQDYNGMIYSVYISIIYNNRIGVS 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car05g03021 120 Gene3D - 35 115 IPR012677 -
Car05g03021 120 PANTHER POLYADENYLATE-BINDING PROTEIN 16 103 - -
Car05g03021 120 PANTHER RNA BINDING PROTEIN 16 103 - -
Car05g03021 120 SUPERFAMILY RNA-binding domain, RBD 15 100 IPR035979 GO:0003676
Car05g03021 120 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 100 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car05g03021 Car-Chr5 75059015 75059377 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car05g03021 16 102 Eukaryotic Initiation Factors Gene Family AT2G36660 54.023 3.61e-25 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car05g03021 K13126 - gmx:100804671 134.806